RNA id: TU2049168


Basic Information

Item Value
RNA id TU2049168
length 1641
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1790287
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23190737 ~ 23192377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAGCTCcatgtgattttaattttggcaATCGGTTCCAAAGTATTCTCGCACATAATAGAGATATGTGATcgcatacaaatgtaagcaagggtTGAAATTATTATTATCTGTTTGCCCTTCTTGCGGGCAATTTGCTGTCTACAAATGTGTAATTAAGTTCCAGCCCCCTGACCAAAAAgatcaaataaatacatttggtacataattggtcaaGCCTAAAATTAACAAATTTAGAGTTGGCCTACAATTATacttaatttgtattttattttgaatcGCCTAGTAATAACCACTGGTGAGTGATGTGAACATGAATTTCTGTGGTCCCTACTGTTGCAGTCATGACGCAAGTGgagctatgctgtcaaatcctcccacgtTTCTCGTTTGACCCGTTGTTTTCAGCAATTGATATTTTTGAATTTGGTTATCATATTGAAGATTTACTAGCAACAAACTACAGTGTGAcagatcgaggcacagatctggggaagggtaccaaaaaatgtctgcagtattgaaggtccccaagaacacagtgacctccatcagtCTTAAAgtgaggaagtttggaaccaccaagactcttcctagtgctggctgCCCATGTGAGTGTCATGACGAGAAGGCAAACTTTTCTAGCTATGCCAGGCAAAATCTGGtatcagctcattgttatggatgcatCAAAATTAATTTaaatagaaaacagcttaaacaaacaaATGCATCTACTccgctgttattctggctgcagagGTCGTGACGGCGTTGACcgtagctagttggctagctagttggGACAAGAACATTGCCAGCGAGCATGGCAACCGAACATATCgaatgaacaactgggtcgcgccTCTAGCAACTGAAAAATTAGAAAGTTTGTCTTACTTGGTccattatttacaagttaatatACACAACAATATTTCTTTACTCCCATTAAGTCTGAAGATAAAGTTTGTATTGCAAGGTGGTTCTACTGACTTCAGGTGTGTCAAGCACTTAGAAAAACACCTGAATGGGTTCTGTAGCCAATGAAAGACCAAATAAAGAGAAACGAGCAGACACTGAGGCCTTGTAAGATTCAAGGGCTCAGTTGGAAAGAACGGCATAAGGGATGCTTTGTTCTTTCATCTTTAACACATTTCTAACTCATCTGGAGTCATTTCAATTTAGAGAATGTGCCAGGAATGTAATGTTATGTGGACTGATGCACATTGGAAGTTACCCAAATTGTCCACCTCTGGAGCCTGTTCAGGAGGGTGCAACATCACAGAATGTTCAAATAGGAATGCATTGTGTATGTACAATGAGGAAATGTGTCAGTTTTACACAGTACATCCATCTACAACATTCTGAACATTTCAACTCAGTGTCTTTAGCCTTGCAATCTTTTGCTGTTTGAGTTTAAATATGAGACAGCCATGTCAATAAAAGGCTTATTTATGTGGAAACCAACAACCAAATGAAGATTGTTTTACATTGTGTATAGCTGCTCACAAAATGGCTGCAGCTGTTATTTTCAATCCCAATCGTTATGTTAGTGTTGAACAGaaaattgtatttttgtttcagatATGTACAACCATTCCTGTATCTATTTTCTACAATAAATCCTTACGTATGGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2049092 lncRNA downstream 171896 23018621 ~ 23018841 (-) True G1790215
TU2048658 lncRNA downstream 407687 22782723 ~ 22783050 (-) True G1789802
TU2048656 lncRNA downstream 408139 22782384 ~ 22782598 (-) True G1789800
TU2048647 lncRNA downstream 415461 22775038 ~ 22775276 (-) True G1789791
TU2048629 lncRNA downstream 424670 22765753 ~ 22766067 (-) True G1789773
TU2049170 lncRNA upstream 1443 23193820 ~ 23194168 (-) True G1790289
TU2049186 lncRNA upstream 44858 23237235 ~ 23237520 (-) True G1790305
TU2049197 lncRNA upstream 56615 23248992 ~ 23249257 (-) True G1790316
TU2049199 lncRNA upstream 57614 23249991 ~ 23250229 (-) True G1790318
TU2049200 lncRNA upstream 58411 23250788 ~ 23251076 (-) True G1790319
XM_021579288.2 mRNA downstream 111229 23056644 ~ 23079508 (-) True dcbld2
XM_021579287.2 mRNA downstream 111232 23056644 ~ 23079505 (-) False dcbld2
XM_036959585.1 mRNA downstream 147865 23023970 ~ 23042872 (-) True LOC118943636
XM_021579286.2 mRNA downstream 194470 22990694 ~ 22996267 (-) True LOC110501602
XM_036958963.1 mRNA downstream 554231 22240745 ~ 22636506 (-) False LOC110502069
XM_036959550.1 mRNA upstream 5389 23197766 ~ 23235686 (-) False LOC110502006
XM_036959549.1 mRNA upstream 5389 23197766 ~ 23235687 (-) False LOC110502006
XM_036959546.1 mRNA upstream 5389 23197766 ~ 23235688 (-) False LOC110502006
XM_036959547.1 mRNA upstream 5389 23197766 ~ 23235688 (-) False LOC110502006
XM_036959548.1 mRNA upstream 5389 23197766 ~ 23235688 (-) True LOC110502006
TU2049161 other downstream 21374 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 771239 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1369792 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 2734754 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 2844723 20345699 ~ 20346014 (-) True G1786832
TU2049906 other upstream 240617 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 1134352 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1656214 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1664447 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1793582 24985959 ~ 24986268 (-) True G1792433

Expression Profile