RNA id: TU2049197


Basic Information

Item Value
RNA id TU2049197
length 266
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1790316
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23248992 ~ 23249257 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgcagttcttgacacactcaaactggtgcacctggcacctactaccataccccgttcaaaggcacttaaatcttttatcttgtccattcaccctctgaatggcacacttaaacaattcatgtctcaattgtctcaaggcttaaagatccttctttaatctgtctcctcctcttcatcttcacTGGTTAAAGTCCATCTAACAGgtgaaatcaataagggatcataactttcacctggattcacctagtcagtctatgtcatggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2049186 lncRNA downstream 11472 23237235 ~ 23237520 (-) True G1790305
TU2049170 lncRNA downstream 54824 23193820 ~ 23194168 (-) True G1790289
TU2049168 lncRNA downstream 56615 23190737 ~ 23192377 (-) True G1790287
TU2049092 lncRNA downstream 230151 23018621 ~ 23018841 (-) True G1790215
TU2048658 lncRNA downstream 465942 22782723 ~ 22783050 (-) True G1789802
TU2049199 lncRNA upstream 734 23249991 ~ 23250229 (-) True G1790318
TU2049200 lncRNA upstream 1531 23250788 ~ 23251076 (-) True G1790319
TU2049201 lncRNA upstream 2236 23251493 ~ 23251716 (-) True G1790320
TU2049895 lncRNA upstream 59596 23308853 ~ 23309294 (-) True G1790926
TU2049900 lncRNA upstream 66628 23315885 ~ 23316235 (-) True G1790931
XM_036959546.1 mRNA downstream 13304 23197766 ~ 23235688 (-) False LOC110502006
XM_036959547.1 mRNA downstream 13304 23197766 ~ 23235688 (-) False LOC110502006
XM_036959548.1 mRNA downstream 13304 23197766 ~ 23235688 (-) True LOC110502006
XM_036959549.1 mRNA downstream 13305 23197766 ~ 23235687 (-) False LOC110502006
XM_036959550.1 mRNA downstream 13306 23197766 ~ 23235686 (-) False LOC110502006
XM_021579884.2 mRNA upstream 49057 23298314 ~ 23324737 (-) False LOC110502001
XM_036959545.1 mRNA upstream 49057 23298314 ~ 23327132 (-) True LOC110502001
XM_021579880.2 mRNA upstream 84339 23333596 ~ 23351720 (-) False LOC110502000
XM_021579874.2 mRNA upstream 84339 23333596 ~ 23351721 (-) False LOC110502000
XM_021579875.2 mRNA upstream 84339 23333596 ~ 23351721 (-) False LOC110502000
TU2049161 other downstream 79629 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 829494 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1428047 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 2793009 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 2902978 20345699 ~ 20346014 (-) True G1786832
TU2049906 other upstream 183737 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 1077472 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1599334 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1607567 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1736702 24985959 ~ 24986268 (-) True G1792433

Expression Profile