RNA id: TU2049913


Basic Information

Item Value
RNA id TU2049913
length 245
lncRNA type read_through
GC content 0.49
exon number 2
gene id G1790939
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23321352 ~ 23385292 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccgtctgaagtttgccaatgaccatctggatgatccagaggaggaatgggagaaggtcatgtggtctgatgagacaaaaatagagctttttggtctacactccactcgccgtgtttggaggaagaagaaggatgagtacaaccccaagaacaccatcccaaccgtgaagcatggaggtggaaacatcattctttggggatgcttttctgcaaaggggacaggacgactgcaccgtattgagggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2049900 lncRNA downstream 5117 23315885 ~ 23316235 (-) True G1790931
TU2049895 lncRNA downstream 12058 23308853 ~ 23309294 (-) True G1790926
TU2049201 lncRNA downstream 69636 23251493 ~ 23251716 (-) True G1790320
TU2049200 lncRNA downstream 70276 23250788 ~ 23251076 (-) True G1790319
TU2049199 lncRNA downstream 71123 23249991 ~ 23250229 (-) True G1790318
TU2049930 lncRNA upstream 8102 23393394 ~ 23394736 (-) True G1790951
TU2049961 lncRNA upstream 80095 23465387 ~ 23465759 (-) True G1790982
TU2049962 lncRNA upstream 80845 23466137 ~ 23466405 (-) True G1790983
TU2049968 lncRNA upstream 85081 23470373 ~ 23470595 (-) True G1790989
TU2049969 lncRNA upstream 85792 23471084 ~ 23471411 (-) True G1790990
XM_036959546.1 mRNA downstream 85664 23197766 ~ 23235688 (-) False LOC110502006
XM_036959547.1 mRNA downstream 85664 23197766 ~ 23235688 (-) False LOC110502006
XM_036959548.1 mRNA downstream 85664 23197766 ~ 23235688 (-) True LOC110502006
XM_036959549.1 mRNA downstream 85665 23197766 ~ 23235687 (-) False LOC110502006
XM_036959550.1 mRNA downstream 85666 23197766 ~ 23235686 (-) False LOC110502006
XM_036959564.1 mRNA upstream 91646 23476938 ~ 23578990 (-) False si:dkey-100n23.5
XM_036959563.1 mRNA upstream 91646 23476938 ~ 23578991 (-) False si:dkey-100n23.5
XM_036959566.1 mRNA upstream 91678 23476970 ~ 23578991 (-) False si:dkey-100n23.5
XM_036959565.1 mRNA upstream 91678 23476970 ~ 23578992 (-) True si:dkey-100n23.5
XM_021579938.2 mRNA upstream 198155 23583447 ~ 23585473 (-) True LOC110502029
TU2049161 other downstream 151989 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 901854 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1500407 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 2865369 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 2975338 20345699 ~ 20346014 (-) True G1786832
TU2049906 other upstream 47702 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 941437 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1463299 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1471532 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1600667 24985959 ~ 24986268 (-) True G1792433

Expression Profile