RNA id: TU2049962


Basic Information

Item Value
RNA id TU2049962
length 269
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1790983
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23466137 ~ 23466405 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatcatacaatgtgattttctgaatttttgttttagattccgtctctcacagttgaagtgtacctatgataaaaaattacagacctctacatgctttgtaagtaggaaaacctgcaaaatcggcagtgtatcaaatacttcttctccccactggattgtgtttcaaaacacccagtcactacaaagatacaggactccttcctaactcagttgacggagaggaaggaaacctctcagggatttcaccatgagaccaatggtgatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2049961 lncRNA downstream 378 23465387 ~ 23465759 (-) True G1790982
TU2049930 lncRNA downstream 71401 23393394 ~ 23394736 (-) True G1790951
TU2049913 lncRNA downstream 80845 23321352 ~ 23385292 (-) True G1790939
TU2049900 lncRNA downstream 149902 23315885 ~ 23316235 (-) True G1790931
TU2049895 lncRNA downstream 156843 23308853 ~ 23309294 (-) True G1790926
TU2049968 lncRNA upstream 3968 23470373 ~ 23470595 (-) True G1790989
TU2049969 lncRNA upstream 4679 23471084 ~ 23471411 (-) True G1790990
TU2049971 lncRNA upstream 5855 23472260 ~ 23472510 (-) True G1790992
TU2049905 lncRNA upstream 6240 23472645 ~ 23474765 (-) True G1790934
TU2049901 lncRNA upstream 8431 23474836 ~ 23476010 (-) True G1790932
XM_036959542.1 mRNA downstream 5548 23368423 ~ 23460589 (-) False LOC110501997
XM_036959540.1 mRNA downstream 5550 23368423 ~ 23460587 (-) False LOC110501997
XM_036959539.1 mRNA downstream 5551 23368423 ~ 23460586 (-) False LOC110501997
XM_036959541.1 mRNA downstream 5551 23368423 ~ 23460586 (-) False LOC110501997
XM_021579918.2 mRNA downstream 102731 23354928 ~ 23363406 (-) True LOC110502015
XM_036959564.1 mRNA upstream 10533 23476938 ~ 23578990 (-) False si:dkey-100n23.5
XM_036959563.1 mRNA upstream 10533 23476938 ~ 23578991 (-) False si:dkey-100n23.5
XM_036959566.1 mRNA upstream 10565 23476970 ~ 23578991 (-) False si:dkey-100n23.5
XM_036959565.1 mRNA upstream 10565 23476970 ~ 23578992 (-) True si:dkey-100n23.5
XM_021579938.2 mRNA upstream 117042 23583447 ~ 23585473 (-) True LOC110502029
TU2049906 other downstream 5777 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 296774 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1046639 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1645192 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3010154 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 860324 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1382186 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1390419 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1519554 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 2244168 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile