RNA id: TU2049901


Basic Information

Item Value
RNA id TU2049901
length 1175
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1790932
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23474836 ~ 23476010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATAcgtagggaggaagagagaaatggaGCAAAGGAGGGATAGTGAGGGGTTTCTGTGGTAGATCTGTCAGGATCCATTATTAATCCACATCCTTTACTATTTAATAACctccaactacacacacacacacacactatcctgcCTTTCTGTCTGACTTACACAGCATCGTAACAGAACCAGCGAAGCAGCTATAGTGCTTTAAACAGCCTTCAAACCTAATGCTACAcactagcctgggtgccagtctgacTCTGCTTCAGTCCTAGTCAACAACTGCAGAGCTGGCTAAGGAAACAACAGACtgtcctggtacccaggctagCATATCACTAGTCCCAAGGggcttcctctcctcaccttctttccttcatctgcactgatctgaaaagACAGCATAGGTGAAAGCAAAATGTGTGTTTAAtgttgaaaggagaggaaaagagtTAAGACTATTGACATGTACCCAGGTTCTGCATAGTCACTTGGCTTACAGAGCTCTCCATGTTATTTTTACATTGACATGTTtcttgtcatttagcagacgctcttatccagagcgatttacaggagaaattagagttgagtgccttgctcaaggacacttCCACAGATTTTTCACCAAGTCGGCTTGTGGATTTgcaccagcgacctttcggttactggcccaacactcttaacctctagactacctgctgcttATGCTATTAGCTTGTGTTTATTATGTTATTTCTGGCTTCTTTTTTATACTGTATGACTACTGTTAGCAAATCCCTCCCAAGAACATGTTACGATCACGATAATGCCCAGCATGATATGTGACTTACTGAGCTCTGAGGGTTATAATACAAGGCAAGTTaaacaagttagctagctaacttacctGAATATTCTGATATAACTTTTATAACTTTTTTTAGAAAGATAAGCTTGAAATGGGCATGGTCTAATTGACTCGACAACCAAAACGCAAATCTAAGTTTAGCTTTCTTAATTAACCAGAAAATCAGtagttatttctggttgtttatcAGTTAGCAGGCTAACTCATTGATCTTGCTTTGTAGTATAACCCTCTGGTGCTAATGCTACAGTAGCTGACCATACAGCTTCTCTAACTCAACTCAACATACATAAAAGGACTCCGTTCAAAACAGACAGataaatggagggag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2049905 lncRNA downstream 71 23472645 ~ 23474765 (-) True G1790934
TU2049971 lncRNA downstream 2326 23472260 ~ 23472510 (-) True G1790992
TU2049969 lncRNA downstream 3425 23471084 ~ 23471411 (-) True G1790990
TU2049968 lncRNA downstream 4241 23470373 ~ 23470595 (-) True G1790989
TU2049962 lncRNA downstream 8431 23466137 ~ 23466405 (-) True G1790983
TU2049992 lncRNA upstream 27776 23503786 ~ 23567779 (-) True G1791013
TU2050007 lncRNA upstream 58579 23534589 ~ 23535166 (-) False G1791027
TU2050008 lncRNA upstream 58579 23534589 ~ 23535166 (-) True G1791027
TU2050028 lncRNA upstream 119112 23595122 ~ 23595338 (-) True G1791047
TU2050044 lncRNA upstream 144570 23620580 ~ 23620880 (-) True G1791063
XM_036959542.1 mRNA downstream 14247 23368423 ~ 23460589 (-) False LOC110501997
XM_036959540.1 mRNA downstream 14249 23368423 ~ 23460587 (-) False LOC110501997
XM_036959539.1 mRNA downstream 14250 23368423 ~ 23460586 (-) False LOC110501997
XM_036959541.1 mRNA downstream 14250 23368423 ~ 23460586 (-) False LOC110501997
XM_021579918.2 mRNA downstream 111430 23354928 ~ 23363406 (-) True LOC110502015
XM_036959564.1 mRNA upstream 928 23476938 ~ 23578990 (-) False si:dkey-100n23.5
XM_036959563.1 mRNA upstream 928 23476938 ~ 23578991 (-) False si:dkey-100n23.5
XM_036959566.1 mRNA upstream 960 23476970 ~ 23578991 (-) False si:dkey-100n23.5
XM_036959565.1 mRNA upstream 960 23476970 ~ 23578992 (-) True si:dkey-100n23.5
XM_021579938.2 mRNA upstream 107437 23583447 ~ 23585473 (-) True LOC110502029
TU2049906 other downstream 14476 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 305473 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1055338 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1653891 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3018853 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 850719 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1372581 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1380814 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1509949 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 2234563 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile