RNA id: TU2050074


Basic Information

Item Value
RNA id TU2050074
length 1989
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G1791091
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23799990 ~ 23802042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggccgaatactttcgcaaggcactgtacatagagaACCTGGCTCCTATCGTGGGGACTGGGCCTCACATGTACACTTAGCAGGATCGAACATTTTACTGTCTTCTTTTATCTTGTGATATGAAGAGAAAAAACGTTTTTCaaatctgtttttttgttgtcacgGAGACATGCTTTGAACAGAATCTGTGCTCTCCTttgttttctccccccccccatgCCTCATTCTGTCTTAGCTGCATGGGCTGAATGctctatatgtaatataatatgaaGTGTAATAGTATCTGAAAGGAAGTCGAATGTGTTACTGTTTGCGTTCTATGCACTCATTTAGAGTCAGATGATTTACTGGTATTACTGCTCTGTTTATCGGCACTCCCTGTCTGTTAACTGATATTCCATGTCCATAGAATTGTGTTTCAGCTCCATTCCTCATTTTATTCCAGAAATCTTTCCAATTCCTAAATCATCTGTGAATATCTATGAATATAATAATttatttttctcaggctttctctgtcccatagATCCCCCCCAACAGCCCTGCTCCCCATCCCATCCCTTCtctaccactccctctctctttgtgctGTGTCGGCTTAGTGTGTGTGCGGCGCTTTGGAGTTGGTGTGTAAGAGAATTAGATTAAGTTGATAGAGATGGGCAGGGATTGAGTGTGATAAAAATTAGAATGTACAAATCTGACATTCCCTGTCACCTTTCGTATCATCACTcttcacacacacattccctccaGTGTTTGATACATGTACCTATGTGTTTCATGGTGGATATCCCCCTTCTTGCTTCTCTTGTCAAATCTCAAAGTCTCAGACCTCCTGGTTTTAAAAGCAGAGGCTAAAGAAATACTGACCTCAGACCAGTTTGATGGTAAAATTGATCTCGGACCAATGTGTGCGAGGTGAAAAACGGACCTgagcccagattcacaaaacacgTATtgtgcaaaaacctaagaaaaataAGCTCCTGAGTGCAATTCCTCAACAATCTCATATCTTCTTGCCATTAAAAAAACAAGGTGTCTAGCTAGACATGGCAAATGTGTTAGCATATTCCTTACTGAAAATACTGTTGTAAAACATGTTCTTGGATTTAAAATAATCAATACTGAAACTTTCAGATGATGGTTGAGTGAATTAAATATGTTCAATTGCTTTCATGAGCTTTTTCTCTCACTGCCCTGAGTTTAGCTATATCTTGGAATTAAGGACATTATTTTCAACAATCTAATTTATTAATGTTTTTCTCAAGGCAAAACATAAGAAATAGCGCAATTGTTTTCCCCAATAACCTTTGAAGAATAGCAACTTAATTTCCTTCTTAAATCTATAGTTAAGGAAAAAAtgccagttaagaacacatttaaggttttgtgaatctgggtCCTGATATGGAGGGCACAACATCAATGTTTAGATCAGATGTCATTGTCTATTAAGTAGTGTTTGTTacatttctatttttttatttttattttattttacctttatttaaccaggcaagtcagttaagaacaaattcttattttcaatgacggcctgggaacagtgggttaactgcctgttcaggggcagaacgacagattcgtaccttgtcagctcgggggtttgaactcgcaaccttccggttactagtccaacactctaaccactaggctaccctgccgccattCAGAATGTTTCACCTCACTGAACACACCCCAGATCTGGGATCAGTATTTAGAGGCAGTAGAGACCAGACATACCCCCTCCCAAAATTAAGTCAAACTACAGCCTCCAATAGACATGAATGTGACATTCATATTGTGCAATTATTCCacagatctacacacacacaaactgaatcGGGTAAATGTGTTGTCGAGGATACTCGTGCCGTCTTTCATTTGTTAATTCTGACTTTCGTTGTACCTTTACAAAGCTTTCTACACACATCccatcaataaaaaaaatgttaataCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050094 lncRNA downstream 121530 23678164 ~ 23678460 (-) True G1791104
TU2050065 lncRNA downstream 143491 23656271 ~ 23656499 (-) True G1791084
TU2050064 lncRNA downstream 144535 23655255 ~ 23655455 (-) True G1791083
TU2050062 lncRNA downstream 146536 23652722 ~ 23653454 (-) True G1791081
TU2050049 lncRNA downstream 172762 23626710 ~ 23627228 (-) True G1791068
TU2050156 lncRNA upstream 20337 23822379 ~ 23840568 (-) True G1791155
TU2050148 lncRNA upstream 30831 23832873 ~ 23835601 (-) True appb
TU2050170 lncRNA upstream 34690 23836732 ~ 23904072 (-) True G1791168
TU2050152 lncRNA upstream 38850 23840892 ~ 23868836 (-) True G1791153
TU2050208 lncRNA upstream 127680 23929722 ~ 23930005 (-) True G1791206
XM_036959571.1 mRNA downstream 11377 23776064 ~ 23788613 (-) True LOC110502024
XM_036959570.1 mRNA downstream 11378 23776064 ~ 23788612 (-) False LOC110502024
XM_036959573.1 mRNA downstream 14299 23776064 ~ 23785691 (-) False LOC110502024
XM_036959572.1 mRNA downstream 14398 23776064 ~ 23785592 (-) False LOC110502024
XM_036959554.1 mRNA downstream 36870 23738606 ~ 23763120 (-) True LOC110502018
XM_036959553.1 mRNA upstream 1535 23803577 ~ 23829064 (-) False appb
XM_021579894.2 mRNA upstream 1535 23803577 ~ 23835647 (-) False appb
XM_021579896.2 mRNA upstream 1535 23803577 ~ 23835647 (-) False appb
XM_021579917.2 mRNA upstream 131818 23933860 ~ 23938722 (-) True LOC110502014
LOC110502070 mRNA upstream 150533 23952575 ~ 23958559 (-) False LOC110502070
TU2049906 other downstream 339630 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 630627 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1380492 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 1979045 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3344007 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 524687 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 1046549 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 1054782 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1183917 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 1908531 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile