RNA id: TU2050152


Basic Information

Item Value
RNA id TU2050152
length 3818
lncRNA type antisense_over
GC content 0.43
exon number 6
gene id G1791153
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23840892 ~ 23868836 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtttgtatgcggctttattaactcaatgatacatatctttttttacattgtttgcaaactgatgtgaCCCGTATTAATGcaagccccccaaaaaatgttttttctaAAAATGTGGGTCTCAaaagccccacctgccctgaatgacgggtcggcACTGGCCACTGTTATCATACAGTTTGGTGTAGTCACTTAGCTGTTGTTGTCAGAACAGAATAATTAATGCCGTGGTCTTCCAACATGACCGCCAGGAGGCATCGTTTACATGAAAACTAATAATTTTGTCTAACATAAAACCAAATGGTTTGAATCCTCAGCATGATTCAAATGGTTCAGCAAAGTAGTCACTTCCTACTGCAGCTTCCTTTGAATGTGACCAGTGACATTATAAGGGGTTTTAATAGGACAGTAGGGGCTCCCCCATACCAGTTTGGCATTTACAGAGGGAAATCTTGTttagaccagacagatctacatTAGACCAACACCAGGAACATGCAGTATACAGCGACAGATCATGGGCATTTTTACAGTATTCTCTTTGTAcatcaagtcagaaccgtagaaTAAATAATGGGGCcaaataagcagacaatgaatgcTCTTATAATATtctatgattacatttctctaaaacaggctatagactacatgtgcaccaccaagtcagaacagtaggcgaaagagggaaaaagggaccaaattattaacGTGAGGCACATGGggtactaacagcttactacacaccacacatagtattacatagctacagtataactccctggcatattacatcatttatgcatcAGTATAAAGTATCACCTGGTTGTGCTCACTTCcttacaaaccactcattgttgaatttgcaatttccaacttgttgtgtaatgtttacgtCCAATGGCCGACGAGCATATATCTGGAACAgaggagtgatgattgctgataatgggcctctgtacacctatgtagatattccataaaaaatctgccttttccagctacaatagccatttacaacattaacaatgtctatactgtatttctttaaaaacaaggatatttataagtgaccccaaacgtttgaacaaaagtgtttttattttattttttatattgtttgcaaactgatatgtgacccgtattaatgccaaaataacatgcaaaacaggcaagccccgcCAAAAATGTTTTTTCTAAAAATGTGGGTCTCAaaagccccacctgccctgaatgacgggtcggcACTGGCCACTGTTATCATACAGTTTGGTGTAGTCACTTGGCTGTTGTTGTCAGAACAGAATAATTAATGCCGTGGTCTTCCAACATGACCGCCAGGAGGCATCGTACGTCAAGCCCTCTATAGGCTATGCAAAGCCTTGGTCGGGTCCATTCGAGTCCACTCAGGTCTATCATCTGTGCTTACTGTACATAGACCTGACACCTGATAACAATCAAACAGGACACGACCCAGACCAGAACAAAAATATTTCATTTCAGACCCGGTCTCAAGTCAGGTCTGGAGTATTCAGGTGGACCTGTGAAGACCTTTAAACTGGAGTAACCAGATAATTTGCTTGACATTTGTAAATTGAATAATCCTTGACATTAGTCATCCCATGACATGGTCTCTAAGTTCACAGCAAGCTACATAACAATAAGCAATTAACATGTCCAATTCTTCACAATTCTAAGTAAAACAACGTCATTGACTATTTACATGAAAACTAATCATTTGGTCTAACATAAAACCAAATGGTTTGAATCCTCAGCATGATTCAAATGGTTCAGCAAAGTAGTCACTTCCTACTGCAGCTTCCTTATAATGTGACCAGTGACATTATAAGGGGTTTTAAAAGCACAGTAGGGGCTCCCCCATTCCAGTTTGACATTAAACACAGGGGTATCTTGTTTAGAGCAGACATATCTACATTAGACCAACACCAGGAACATGCAGTATACAAAATGCATAAAGACAACGATGGCTGTTCAGTCATGTAACAGCTGTTACTCTTCTTAGAAATATGAAAGCACCTGTACTTTAAGAAGTGAGTAAACTCTACAATTGCAATACACAGGCtccctttttgggggggggcttcATTCACTGAGTCTAGCTCACATTCGGTCCATTGACCACAGTCATTTCTCCTATCATGctgttcttctcttctcttttagTTCCTAAACCTTGtctccatggccacattttgtaCTCTGCTCTCGTCATCATATTCGTAACTCAGGGTTCAGTTCAGTGTCATCGAACTAGGGAAAACCATGATTAACCACTTTCAGGTGCCGTTTGCCTCTTTGCATAAAACCCAAAGAATAGTTCAGACATGACGGCACAACACATTGCTCAATGTTGCTCCAAGTTCTACATTGAACACAGGCCTTATTTTAACTTTCAGTTCCTCTTATCATCATCCCTCCATTTTGTTGTCTGCCAGTTGAAGAGAGATTGTTGCATCAGAGGGGGGAGACTCTTCACACATTCAGGCAGAGTCATCTTCATACACATTAAACGACTGGGTCACGCCTCTTTcctgcctctctgtgtctctCGTTGACCTTTCATGTCGGCGACATCTAGTTAGTAAGAACACCAGCAGGACTCCCACAATAAAAATCACAATCAGGCTGACAGCCACAACTGCTGCAACCTGTACTTTATAATGTATGCTACCTTCCATGGGcaTATGATTTTGATTGCAGCTGGAGTTGGAGTTGAGGTTGGAGGCCAAGGCTGTGTTCTCCACCACACATTGCAGTGTTTCACCCTCACTCAGCTCGATGGTCAGGTTGCTGGTCAGGCTGTAGAGTCCTGTAATGTTGTCCAGGTGGGTCACATCCCTCCTGGAGGGGTTCACCAGAGGATGTCCTTCCAGCTCCCAGTGAATCTGGCCCTCTGGATAGCCCCCAGAGGCTTTACACTGGTACACCCTCGACCCCTCTCCCCCTCCGGAACTCACCGAAGCCTGGTCTGAGACGAGGTCCATACAGACACTGTAGCTcgCAGCCACATGTAGAATTACTTGTTCGTAGACAAAAGCGTCGGCTGTAAAGGAGCATTTGTATGTCCCGTGGTCTGCCACAGTGATGCCTGAGAGGAGCAGCGAACAGTTGTCCTTCTCTTCATTTAGAAAGAGACTGGCCCTGTTTTCATATCTCGTCCCTATGGTTGTGTGGTTATTACTTCCATCATGACGGAGCACGATGGTATGCTCTTCTAGCTGCCAGATAATTGTCTTTCTCACATTTCTATTTACGCAGGGGCAATGCAGGAGGACCTTCTGTGTCACAATTCCTTTCACACCTGAGAGGGCCGAGGCAGAGATGAAGACTGCTGCTAATCCCAGGACAGTCCACATGACAAAGTGTGTTCTGTATGTTTCCATTTCCTCCAGACGAGATCAAAGTTGTGTGTGTATCCCAGTTGAACGACACACGTGGAATGCATATAAGTCACGAGTGTCGGTTGTCggttattttttatatatagatTGACGTCAAGCTTCCGCAAAGAAAGATTGCGACAACAGCATTAAAGTAGCCTACATAATATTGACTTGCACCGTCACTGGTGGGAAAGCCAAATGTGTGTTCACAGGACAGTTAACGCTCGTGCGAGCCTGAGTTCAAGGCAATGGGATTATtgggatttcaaatcaaattgtattggtcacatgcatgcGGATGTTGCAAAATGCTTGTTTGAATGAATTTGCTCGGGAAATGTAAGGTTATGAACCCTAGGCATAGGCCCTATCGACTGGTAAAACTGTGTAATAACCTACATCAGCTTCAATGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050156 lncRNA downstream 324 23822379 ~ 23840568 (-) True G1791155
TU2050148 lncRNA downstream 5291 23832873 ~ 23835601 (-) True appb
TU2050074 lncRNA downstream 38850 23799990 ~ 23802042 (-) False G1791091
TU2050073 lncRNA downstream 38850 23800493 ~ 23802042 (-) True G1791091
TU2050094 lncRNA downstream 162432 23678164 ~ 23678460 (-) True G1791104
TU2050208 lncRNA upstream 60886 23929722 ~ 23930005 (-) True G1791206
TU2050209 lncRNA upstream 61768 23930604 ~ 23947305 (-) True G1791207
TU2050220 lncRNA upstream 82180 23951016 ~ 23974542 (-) False LOC110502070
TU2050229 lncRNA upstream 82180 23951016 ~ 24038256 (-) False LOC110502070
TU2050230 lncRNA upstream 82180 23951016 ~ 23974542 (-) False LOC110502070
XM_021579894.2 mRNA downstream 5245 23803577 ~ 23835647 (-) False appb
XM_021579896.2 mRNA downstream 5245 23803577 ~ 23835647 (-) False appb
XM_036959553.1 mRNA downstream 11828 23803577 ~ 23829064 (-) False appb
XM_036959571.1 mRNA downstream 52279 23776064 ~ 23788613 (-) True LOC110502024
XM_036959570.1 mRNA downstream 52280 23776064 ~ 23788612 (-) False LOC110502024
XM_021579917.2 mRNA upstream 65024 23933860 ~ 23938722 (-) True LOC110502014
LOC110502070 mRNA upstream 83739 23952575 ~ 23958559 (-) False LOC110502070
XM_021579905.2 mRNA upstream 153551 24022387 ~ 24041358 (-) False LOC110502010
XM_021579906.2 mRNA upstream 153551 24022387 ~ 24049343 (-) False LOC110502010
XM_021579903.2 mRNA upstream 153551 24022387 ~ 24050582 (-) False LOC110502010
TU2049906 other downstream 380532 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 671529 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1421394 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 2019947 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3384909 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 457893 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 979755 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 987988 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 1117123 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 1841737 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile