RNA id: TU2049665


Basic Information

Item Value
RNA id TU2049665
length 1514
lncRNA type antisense_over
GC content 0.55
exon number 2
gene id G1790709
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23930575 ~ 23947727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcacagcccttacttctgtcaagacgtgctttaagtggtccgtttccgcccagggagcttttgatctcctcaagaatcgttttacatccgcacctatccttgttacacctgatgtcactagacagttcgttgtcgaggttgacgcgtcagaggtgggcgtgggagccattctttctcagcgctccctctctgacgacaaggtccacccttgcgcgtatttttctcatcgcctgtcgccgtcggaacgtaactatgatgtgggaaaccgcgaactgctcgccatccgcttagccctaggcgaatggcgacagtggttggagggggcgaccgttccttttgtcgtttggactgaccataggaaccttgagtacatccgttctgccaaacgacttaatgcgcgtcaggcgcactgggcgctgtttttcgctcgtttcgagttcgtgatttcttatcgtccgggctctaagaacaccaagcctgatgctttatctcgtctcttcagttcttcagtagcctccactgaccccgaggggattctccctgaggggcgtgttgtcgggttgactgtctggggaattgagaggcaggtaaaacaagcgctcactcacactccgtcgccgcgcgcttgtcctaggaaccttcttttcgttcccgttcctactcgtctggccgttcttcagtgggctcactctgccaagttagccggccaccctggcgttcggggtacgcttgcttccattcgccagcgtttttggtggcccacccgggagcatgacacgcgtcgtttcgtggctgcttgttcggtctgcgcgcagactaagtccggtaactcccctcctgccggccgtctcaggccgcttcctattccctctcgaccgtggtctcacatcgccttagattttgtcaccggactgccttcgtcagcggggaagactgttattcttacggttgtcgataggttctctaaggcggctcatttcattccccttgctaagcttccttctgctaaagagacggcacaaatcatcatcgagaatgttttcagaattcatggccttccgtcagacgtcgtttcggacagaggtccgcaattcacgtctcaattttggagggagttttgccgtttgattggggcttccgtcagtctctcttccggctttcacccccagtctaacggtcaagcagaacgggccaatcagactattggtcgcatcttacgcagtctttcttttcgtaaccctgcgtcttggtcagaacagctcccctgggcagaatacgcccacaactcgcttccttcgtctgcgaccgggctatctccttttcagagtagcctcgggtaccagcctccgctgttctcatctcagttcgccgagtccagcgtcccctccgctcaggcttttgtccaacgttgcgagcgcacctggaagagggtcaggtctgcactttgccgttataggacgcagactgtgagggctgctaataagcgtagaactaagagtcctagatattgtcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2049661 lncRNA upstream 7381 23922965 ~ 23923194 (+) True G1790705
TU2049651 lncRNA upstream 21609 23908760 ~ 23908966 (+) True G1790695
TU2049649 lncRNA upstream 24847 23905418 ~ 23905728 (+) True G1790693
TU2049632 lncRNA upstream 83546 23845665 ~ 23847029 (+) True G1790676
TU2049311 lncRNA upstream 187381 23740562 ~ 23743194 (+) True G1790427
TU2049679 lncRNA downstream 74659 24022386 ~ 24023376 (+) True LOC110502003
TU2049750 lncRNA downstream 103153 24050880 ~ 24051163 (+) True G1790785
TU2049781 lncRNA downstream 129811 24077538 ~ 24077768 (+) True G1790814
TU2049792 lncRNA downstream 175087 24122814 ~ 24123198 (+) True G1790825
TU2049768 lncRNA downstream 193045 24140772 ~ 24141197 (+) True G1790801
XM_036959555.1 mRNA upstream 28592 23894454 ~ 23901983 (+) False LOC110502009
XM_021579889.2 mRNA downstream 8436 23956163 ~ 24022537 (+) False LOC110502003
XM_021579887.2 mRNA downstream 8437 23956164 ~ 24022537 (+) False LOC110502003
XM_021579888.2 mRNA downstream 8437 23956164 ~ 24022537 (+) False LOC110502003
XM_021579919.2 mRNA downstream 137174 24084901 ~ 24118246 (+) False LOC110502017
XM_021579920.2 mRNA downstream 137890 24085617 ~ 24118246 (+) True LOC110502017
TU2049337 other upstream 498192 23416093 ~ 23432383 (+) True G1790442
TU2047594 other upstream 1930952 21998473 ~ 21999623 (+) True G1788815
TU2047590 other upstream 1934482 21995364 ~ 21996093 (+) True G1788811
TU2046423 other upstream 2794098 21134265 ~ 21136477 (+) True G1787719
TU2044940 other upstream 3646004 20283181 ~ 20284571 (+) True G1786330
TU2049772 other downstream 170835 24118562 ~ 24119475 (+) True G1790805
TU2050548 other downstream 446341 24394068 ~ 24410713 (+) True LOC110501605
TU2051105 other downstream 895215 24842942 ~ 24843285 (+) True G1792040
TU2051120 other downstream 901239 24848966 ~ 24849344 (+) False LOC110501609
TU2051116 other downstream 1059448 25007175 ~ 25013655 (+) True LOC110501609

Expression Profile