RNA id: TU2050328


Basic Information

Item Value
RNA id TU2050328
length 249
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1791301
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24073803 ~ 24074051 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggaaagcacttttaaagaacaaccaggcatcctctactgacgggatatGGTCCATAtgcttccaggatacccgggccaggtcgattagaaaggcctgctcgcagaagtgttttagggagcgtttgacagtgatgaggggtggtcgtttgaccgcggacccattacggacacaggcaatgagacagtgatcgctgagatcctggttgaaaacagcagaggtgtatttagagtgcAAGTtgatcaggat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050324 lncRNA downstream 21975 24051613 ~ 24051828 (-) True G1791297
TU2050323 lncRNA downstream 22241 24051300 ~ 24051562 (-) True G1791296
TU2050320 lncRNA downstream 37627 24035538 ~ 24036176 (-) True G1791293
TU2050234 lncRNA downstream 99261 23951016 ~ 23974542 (-) False LOC110502070
TU2050330 lncRNA upstream 1300 24075351 ~ 24075573 (-) True G1791303
TU2050276 lncRNA upstream 55057 24129108 ~ 24138203 (-) True G1791249
TU2050373 lncRNA upstream 143816 24217867 ~ 24218370 (-) True G1791344
TU2050266 lncRNA upstream 245391 24319442 ~ 24324733 (-) True G1791242
TU2050508 lncRNA upstream 295586 24369637 ~ 24370091 (-) True G1791474
XM_036959586.1 mRNA downstream 1498 24053262 ~ 24072305 (-) True LOC110502071
XM_021579903.2 mRNA downstream 23221 24022387 ~ 24050582 (-) False LOC110502010
XM_021579904.2 mRNA downstream 23221 24022387 ~ 24050582 (-) True LOC110502010
XM_021579906.2 mRNA downstream 24460 24022387 ~ 24049343 (-) False LOC110502010
XM_021579905.2 mRNA downstream 32445 24022387 ~ 24041358 (-) False LOC110502010
XR_002470286.2 mRNA upstream 8045 24082096 ~ 24085731 (-) True LOC110502032
XM_036959568.1 mRNA upstream 64613 24138664 ~ 24141447 (-) False LOC110502019
XM_021579924.2 mRNA upstream 64613 24138664 ~ 24141570 (-) False LOC110502019
XM_021579923.2 mRNA upstream 64613 24138664 ~ 24141597 (-) True LOC110502019
XM_021579897.2 mRNA upstream 67787 24141838 ~ 24147526 (-) False naxd
TU2049906 other downstream 613443 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 904440 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1654305 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 2252858 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3617820 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 252678 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 774540 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 782773 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 911908 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 1636522 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile