RNA id: TU2050266


Basic Information

Item Value
RNA id TU2050266
length 4035
lncRNA type antisense_over
GC content 0.47
exon number 11
gene id G1791242
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24319442 ~ 24324733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATTTACACAGTATGGGGACTGGGAGGTGAGAAGAATAGTTGGCAAAACGTTTGGTCGGTTGGTTAATAATGAGCTAGGGACTACAACCAAGAACTCTCAAGCAAAATTTGCCACTGAACTCAAACGTATTCCTAAACAAGTGCTACTAAAATTGTATGTATGAATGAGCATTTTCTGAagaatcattaaaaaaaaaacattttgagttCAGTCTACTAATGATAAGAGCCTTTTACTTTCAGAATGCTTTGATTGGAGGAAACCTATGAATGATTGCCGGTTACAAGTAGTTTGTGAGGTTTGGATACTTTATTTCTTCAGTGTGTAAAGTATTTCTTTAGTACTCGACTAATTCTGGGCTTGGACAGGAGAGTCTTGGTTCTAGGGTTTTTGCGTTCACCCTCAGACAAAAGGGGGAGCAGCAGGGTAGGATTGATGTAGTAGATTAGGGACAAGTGCCAAACAGAGCAGTAGGGAATTTACATTTTAAAAGGGAGCTTGAAAAGTAGATTCAAAATACCCAGGAATCTGTAAAAGCACTTAGTCATAAATATATCCTTCTCTGTCTTTGACCAAAATGGAAAATCTAAATATATCTAGCTAATTATCACAGGAATAATATTGCAGGAGGCATGATCAAGTATATCAGAGTAAGAATAAGAGTACACATAGGTGTGCGTGTGTATACATGTCTTTCTTTGGGTTCTAGCATTTGATTAATAAGCTTCAACACACAAAATAATGTGAAGGACGTATTCAGGAAACGTACATCACACAGAACTATTGATGCACACAGAGTTGATTGAGTGGCCAAGTGAACTGACGAGTGTTTGACGACTCGCTGTCTTAAGGATTGCTCTGCACACAAACTACAAGCCATGAACTTCTTCTGTCAACAGGTCCGTGTGTGAAAACTCTTTCGGCTtgtgacaacacacacaccctctgcatACTACAGATGACAAGCTGTGTCAATGTTCCCCCTCGTACTGACAGGGTGTGGATGCGCGAGTGTGTGTGATGTGGGCGGCACCTTCATTGAAGAGGACAGGCtcgtagtaatggctggaacgtaatcaatggaatggtattgaACAGatgttttccatgtgtttgataccattccattaacaTGAATTATTATGAGaggtcctcccctcagcagccttatgtgatgtgtgtgatgcgctccaatgaaataacacactatcagtgatgctgccaccactatgttaCTGTTCTGCATACTGACAGATAAGGCACTGAAGGTGTTGGCCTATAGCGGCAGGTCTGATGTATGCTAACTGTAGCATGTAACATTAAACCCAGTATTAAAACTATAAGTGCCTAGGTCAGGTTGGAACAGAATACCATACTGTACTTTCTTTAGTGACATTGATTATGGTTCTTTGGCGACTCAAATCCACTCAAGCTTTACATTTactcaaataaatacaaattgaaATAACACAAATTAAAACGTAAATACCTGAAGAGATTATGGTGGCTGTTATTTTAGGAAGGAAAAAGAAAAGTCATATATTTACAACAGAACCATCGCGATGCATGCATGCTAGCAACCactagggctctattcaatctgcgtcgctgaagcgttacagattgcaTGATataaatgtaaaggtcatttccgattgagccgacgtATGCAGCGCTTACTGTGAATGCAGTATCTGCTAATGTGGGAACACTGGCTTTGAATTTTCAATCATGCTGTAACGATGAACTTCCGtgacagattgaatagagcccttcaCTTACAGTGATGTCTCAGCATGACAAGCATCTGTAACCAGTGGTAACTCCCATCCTTACATTAGTATTGTGTTATTACAAAAGTAAAAGTGAGGAACAATAACAATATATATAACTAACTCAGAGCTGAAAGTCAGTGGCATTGAGTGAAAATACAAAACATAATGTACTGGAATAAGGCAAGTAGATTAGATTCAATAGCACCTGACTTACACAAACACCCCCTTTCAAAATGGACGCCAGTTTACTAATGGGGAGGGGGGCGGGATGTACTCAGTGCAGTCGTAAACTGGGCGACATTCGCTAGAGAAACGTTGTGAAAATGTTAGTAAAGTGTTCTGCATGATGGAGCGTAGGGCCAGTTGATCTTATGGTTTGGTCTCTGGTGTGTCAGAGAAGGCTGGTAGGAGGAGCTATACGAGGAGTGACTCATTGCAATGGTtaaaatggaacggtatcaaacatataTGAAACACATATTTTACtccattccattattccattccaatgagcctgtcctcctatagctactcccaccagcctcctctgacagtgtgttttgtTCTTTCATCAATCTTTCtgggtgtttttttgttgttctgTTTCACAGTGTGTCTGCCTGTTCCTCTCACACACGCAGTGAAATAGCACCATCCTTTGGTCAATAACACGAAGTCATGCCCCGGACCGTCGGACTGGGTGGGGTCAGGGGTTGTGGTGGGTGGTTAAGGGTCACAGAGAGGTCAGGGGGTAGAGCCTATGTCCTCTTCATGCACACCTGGCAACGGCTAATGTTACTCCGGAGATTTCCTGCCTTTTGTGTGGTGGGCACAGGTTTCGTAAACATCTCCTCGTCCTCGATGGTGGCCAGCCAGAAGCTGTAGGAGTTGGCGTAGTAGTTGCAGGTTCCACGGCCGTGACACTCGATGAACGGAGCGCCACGGAACTCCTCTAGACAGGAGCCAGGAGATGCCAGTGCCTGTCCAGAGCCCTCAGCACCTGCACTAGTGtgCATGACGAAGGAGTAGCCAATCCAGAGTGAGTCCCAGCCATTGGGGCATGATGGGATCATGATGTTCTGACTGTGCACTGCTATCACCATGGCAGGAGCCTCACATACTGAACACCTGCTAATGAAGGGCTTGATGCTCTGGCCAGTGATAGGGGCCATGTTCATTGGCATGGGCTCAGGGGAGGTGAGCCAATAGGAGTAGTCGTTACGGGAGGCAAAGTTACAGACGTTGTTGATGTTACAGAAGAGGAAGGGCATGGGACTGAACTTCCTTAGACAGCTACCAGCCGTACCCAGGTCCTGGCCGTGGGAGCGCTCGTTGCCCTGGACGTAGAGTAGGGAATATCCATCATAGATCACCGACGTTCCCTCAGGACAATGTGGAACCTCCACCGATTGGCTGTGCCTGGTTACCAGGAAACCATGTTCCATGGAGGAGGGGCCAGGAGGACCCACCTGACCCGGAACACCATCAGGTCCTGGGGGTCCAGGGTACCCTCTGGGTCCTGAGGGACCAAGCAAGCCTGGTTCTCCCTTGGCGCCGGGGAGACCATTAAACCCTGGGTTCCCCTCATCACCTTTAATACCCTGAATACCTGTCACAcCTTGCTGTCCTTTCAGCCCAGGGATACCAGAGGGCCCCACAGGCCCCTGAGGGCCCTGATTACCAGGGAAGCCGCTGTCTCCCTTGATGAAGATGTGGGGGCCAGGAGGACCAGGGGGACCATCATTACCTTTGTCTCCTGGGAATCctctgtcccccagctctccTTTGAATCCAACCACTCCGAATTCACCCTTTGTCCCTGGGAAACCAGGCACTCCCTGCagtcccatctctcccttcagTCCATCAACACCTGGAAGGCCAGCTTGACCAGAAAGTCCAGGGTATCCTTGATCTCCTTTGATACCCTGCTCCCCATGTACTCCTGGTTCACCCTGGTCCCCTTTGTCTCCCTTCCCCCCCACGCTGCCTGGAACACCAGCAGGACCTGGAGCACCACTGGTACCTGGTTCTCCAGGCTTTCCTGACACTCCTTGGTCTCCTTTGGGCCCCGCCATGGCGGGTCCTGGGAGACCCCGTTCTCCTGGCTGGCCATGGGAACCCTCAAAGCCTGGAATACCCTTGTCTCCCCTGGTCCCTGGGATACCCGGGATACCTGGAGAGCCTGGGAAACCTGGAGAGCCTTTGTCACCTTTATCCCCAGACGACCCTGGTGTCCCTGAGAAGCCCCTGCCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2050373 lncRNA downstream 101072 24217867 ~ 24218370 (-) True G1791344
TU2050276 lncRNA downstream 181239 24129108 ~ 24138203 (-) True G1791249
TU2050330 lncRNA downstream 243869 24075351 ~ 24075573 (-) True G1791303
TU2050328 lncRNA downstream 245391 24073803 ~ 24074051 (-) True G1791301
TU2050324 lncRNA downstream 267614 24051613 ~ 24051828 (-) True G1791297
TU2050508 lncRNA upstream 44904 24369637 ~ 24370091 (-) True G1791474
TU2050840 lncRNA upstream 124462 24449195 ~ 24449517 (-) True G1791788
TU2050853 lncRNA upstream 195174 24519907 ~ 24541453 (-) False LOC110502073
TU2050854 lncRNA upstream 195174 24519907 ~ 24541453 (-) True LOC110502073
TU2050911 lncRNA upstream 236590 24561323 ~ 24561523 (-) True G1791855
XM_021579872.2 mRNA downstream 55155 24157993 ~ 24264287 (-) True LOC110501998
XM_021579901.2 mRNA downstream 171456 24141838 ~ 24147986 (-) True naxd
XM_021579899.2 mRNA downstream 171719 24141838 ~ 24147723 (-) False naxd
XM_021579897.2 mRNA downstream 171916 24141838 ~ 24147526 (-) False naxd
XM_021579923.2 mRNA downstream 177845 24138664 ~ 24141597 (-) True LOC110502019
XM_036958967.1 mRNA upstream 194841 24519574 ~ 24711403 (-) False LOC110502073
XM_036958966.1 mRNA upstream 194841 24519574 ~ 24727803 (-) False LOC110502073
XM_036958971.1 mRNA upstream 194841 24519574 ~ 24730524 (-) False LOC110502073
XM_036958970.1 mRNA upstream 194841 24519574 ~ 24755850 (-) False LOC110502073
XM_036958968.1 mRNA upstream 198367 24523100 ~ 24727803 (-) False LOC110502073
TU2049906 other downstream 859082 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 1150079 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 1899944 22418130 ~ 22419498 (-) True G1789581
TU2047639 other downstream 2498497 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 3863459 20390516 ~ 20455983 (-) True G1787166
TU2050435 other upstream 1996 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 523858 24848591 ~ 24849752 (-) True G1792342
TU2051424 other upstream 532091 24856824 ~ 24857885 (-) True G1792345
TU2051516 other upstream 661226 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 1385840 25710573 ~ 25711619 (-) True LOC110501627

Expression Profile