RNA id: TCONS_00051559


Basic Information

Item Value
RNA id TCONS_00051559
length 609
RNA type mRNA
GC content 0.49
exon number 6
gene id XLOC_026458
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31606781 ~ 31619463 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCAAGCATCAGGAGATGGGTTGTTCTCAGGGTTTCTCTCTGCTATGGCTTTGCCTAAGCTTGGCAAAGCACTTGGAAGTCCCAACAGTCAGCTACACTTTTACCTGGAGGAATGTTACGAGCAGTGGAGGATGCtggaaaaagagagaaagagaGCGGAAGCTATTCTTACAAAGGCTTACCTGGGTAAACTTGTGTCTATGGTGGTGACCAGTAGCAGCTTACCCAAAATGCCTCCAAACCCCTCCAGAGTGGACCGGCTCATTGTGGATCAGTTGCGTGAACAGGCAAGAGTGACAGGTTTGCTGGGGAAGATGGAACAGTTGCGGAGTTTTCCACTTCATGCTAATATCAGCTCAACATTGGACAGGCATCTTGAGGTCATCTACATCACTCAGGCACGCCGCAAGGAGGAATTCATCAATGCTAGCAACAGACAGAGGCAGCCGGCGGCCTTCTTTAGAGAGGACAGGGAGATTCTTATGTTGGCATCTGCAGTGAAAGACCTGTGCATCAGCACCAGAAAGGCCAGAACTGCTCTTTGGTGTGCATTACAAATGACTTTGCCCAAAACAAGCAGTGTTCATGATGGGTTGTGGCACTGGTAG

Function

GO:

id name namespace
GO:0051321 meiotic cell cycle biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-070117-1657 Predicted to act upstream of or within meiotic cell cycle. Orthologous to human MEIOC (meiosis specific with coiled-coil domain).

Ensembl:

ensembl_id ENSDART00000183547

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052472 lncRNA downstream 6499 31511470 ~ 31600282 (-) False XLOC_026457
TCONS_00052473 lncRNA downstream 6499 31511774 ~ 31600282 (-) False XLOC_026457
TCONS_00052474 lncRNA downstream 89464 31516690 ~ 31517317 (-) True XLOC_026457
TCONS_00053053 lncRNA downstream 429572 31174133 ~ 31177209 (-) True XLOC_026453
TCONS_00051549 lncRNA downstream 498138 31105368 ~ 31108643 (-) False XLOC_026451
TCONS_00053054 lncRNA upstream 32216 31650253 ~ 31650711 (-) True XLOC_026460
TCONS_00053055 lncRNA upstream 258811 31876848 ~ 32055378 (-) True XLOC_026466
TCONS_00051573 lncRNA upstream 271559 31889596 ~ 31891825 (-) True XLOC_026467
TCONS_00051575 lncRNA upstream 304456 31922493 ~ 31924586 (-) True XLOC_026468
TCONS_00053056 lncRNA upstream 317660 31935697 ~ 31957366 (-) False XLOC_026469
TCONS_00051558 mRNA downstream 348322 31257172 ~ 31258459 (-) True XLOC_026456
TCONS_00051557 mRNA downstream 351802 31250066 ~ 31254979 (-) True XLOC_026455
TCONS_00051556 mRNA downstream 352402 31249885 ~ 31254379 (-) False XLOC_026455
TCONS_00051553 mRNA downstream 379940 31201542 ~ 31226841 (-) False XLOC_026454
TCONS_00051561 mRNA upstream 29503 31647540 ~ 31655796 (-) True XLOC_026459
TCONS_00051562 mRNA upstream 87417 31705454 ~ 31716157 (-) False XLOC_026461
TCONS_00051563 mRNA upstream 88222 31706259 ~ 31715714 (-) True XLOC_026461
TCONS_00051564 mRNA upstream 110834 31728871 ~ 31784082 (-) False XLOC_026462
TCONS_00051565 mRNA upstream 110839 31728876 ~ 31783737 (-) True XLOC_026462
TCONS_00051529 other downstream 806123 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 1118687 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 1736657 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 1738049 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 1739241 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051585 other upstream 568097 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 1354937 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 1806155 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 2330632 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 2405128 34023165 ~ 34023613 (-) True XLOC_026529

Expression Profile

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