RNA id: TU2051424


Basic Information

Item Value
RNA id TU2051424
length 1062
RNA type TUCP
GC content 0.42
exon number 1
gene id G1792345
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24856824 ~ 24857885 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgggtcagaagttcacaaacactaagttaactgtgcctttaaacagattggaaaattccagaaaattatgtcatggctttaggagcatctgattgacatcatttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagagcctctttgcttgacatcatgggaaaatcaaaagaaatccgccaagacctcagagaaataattgtagacatccacaagtctggttcattcttgtgagcaatttccaaacacctgaaggtaccacgttcatctgtacaaacaccagtacgcaagtataaacaccatgggacaatgcagcaatcataccgctcaggaaggagacacgttcctTCTCCTACAGATAAACATACTTcagtgcgaaatgtgcaaatcgattgtactttttggagaaatgtcctttggtctgatgaaacaaaaatagaactgtttggccataatgaccatcgttgtgttagGAGGAAAAtgggggtggcttgcaagccgaagaacaccatcccaaccgtgaagcacaggggtggcagcatcatgttgtgggggtgctttgccgcagaaaggactggtgcactacacaaaatagatggcatcatgagggaggaaaattatgtggatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggtcacaaatgggtcttccaaatggacaatgactccaaacatacttccaaagcttaaggacaaagtcaaggtattggagtggccatcacaaagccctgcccTCATTcctgcagaactgaaaaaacgtgtgcgagcaaggaggcctacaaatctgactcagttacaccagctctgtcaggaggaatgggctaaaattcacccaacttattgtgggaagctggtggaaggctacctgaaacgtttgacccaagttaaacaatttaaaggcaatgctactaaatactaattcagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaatcaaagatgaaataaatcactttctctactatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051106 lncRNA downstream 13560 24843047 ~ 24843264 (-) True G1792041
TU2051102 lncRNA downstream 17036 24839223 ~ 24839788 (-) True G1792037
TU2051091 lncRNA downstream 24238 24832264 ~ 24832586 (-) True G1792026
TU2050911 lncRNA downstream 295301 24561323 ~ 24561523 (-) True G1791855
TU2050854 lncRNA downstream 315371 24519907 ~ 24541453 (-) True LOC110502073
TU2051426 lncRNA upstream 3212 24861097 ~ 24861333 (-) True G1792347
TU2051433 lncRNA upstream 17896 24875781 ~ 24876036 (-) True G1792354
TU2051481 lncRNA upstream 78543 24936428 ~ 24936848 (-) True G1792398
TU2051483 lncRNA upstream 80382 24938267 ~ 24938507 (-) True G1792400
TU2051485 lncRNA upstream 83092 24940977 ~ 24941187 (-) True G1792402
XM_021579292.2 mRNA downstream 71822 24779405 ~ 24785002 (-) True LOC110501608
NM_001124564.1 mRNA downstream 77889 24774718 ~ 24778935 (-) True tnfsf13b
XM_036958970.1 mRNA downstream 100974 24519574 ~ 24755850 (-) False LOC110502073
XM_021579294.2 mRNA upstream 241556 25099441 ~ 25149856 (-) False LOC110501610
XM_036959587.1 mRNA upstream 305304 25163189 ~ 25176805 (-) False LOC110501612
XR_005038964.1 mRNA upstream 373376 25231261 ~ 25234195 (-) True LOC118943630
XM_021579307.2 mRNA upstream 415983 25273868 ~ 25278632 (-) True LOC110501615
XM_021579308.2 mRNA upstream 443934 25301819 ~ 25311767 (-) False LOC110501616
TU2051421 other downstream 7072 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 529697 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1396464 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 1687461 23164481 ~ 23169363 (-) True G1790280
TU2048419 other downstream 2437326 22418130 ~ 22419498 (-) True G1789581
TU2051516 other upstream 128074 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 852688 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 2410777 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2883487 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2883487 27741372 ~ 27743599 (-) True LOC110501685

Expression Profile