RNA id: TU2051501


Basic Information

Item Value
RNA id TU2051501
length 378
lncRNA type intronic
GC content 0.48
exon number 1
gene id G1792418
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24968645 ~ 24969022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcgtcagaaCTACCtgtcatgatgactccttgctgtccccagtccacctggccttgctgctgttccagtttcaactgttctgcctgcggctatggaaccctaaactgttcatttttactcttgaggtgctgtcctgttgcaccctctacaaccactgtgatctccacccggcacagccagaataggactggccacccctcatagcctggttcctctctagtttcttcctaggtttttgcctttctagggagtttttcctagccactgtgcttctacacctgcattgcttgctgtttgggcaTTTAGGctagggctatataaatagatttgatttgatagaggactgagggtcttccaaatattgaaagtgtgtaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051497 lncRNA downstream 9697 24958706 ~ 24958948 (-) True G1792414
TU2051491 lncRNA downstream 22768 24945643 ~ 24945877 (-) True G1792408
TU2051485 lncRNA downstream 27458 24940977 ~ 24941187 (-) True G1792402
TU2051483 lncRNA downstream 30138 24938267 ~ 24938507 (-) True G1792400
TU2051481 lncRNA downstream 31797 24936428 ~ 24936848 (-) True G1792398
TU2051502 lncRNA upstream 557 24969579 ~ 24969790 (-) True G1792419
TU2051505 lncRNA upstream 2039 24971061 ~ 24971294 (-) True G1792422
TU2051511 lncRNA upstream 7201 24976223 ~ 24976662 (-) True G1792428
TU2051512 lncRNA upstream 7679 24976701 ~ 24977207 (-) True G1792429
TU2051529 lncRNA upstream 34701 25003723 ~ 25003947 (-) True G1792446
XM_021579292.2 mRNA downstream 183643 24779405 ~ 24785002 (-) True LOC110501608
NM_001124564.1 mRNA downstream 189710 24774718 ~ 24778935 (-) True tnfsf13b
XM_036958970.1 mRNA downstream 212795 24519574 ~ 24755850 (-) False LOC110502073
XM_021579294.2 mRNA upstream 130419 25099441 ~ 25149856 (-) False LOC110501610
XM_036959587.1 mRNA upstream 194167 25163189 ~ 25176805 (-) False LOC110501612
XR_005038964.1 mRNA upstream 262239 25231261 ~ 25234195 (-) True LOC118943630
XM_021579307.2 mRNA upstream 304846 25273868 ~ 25278632 (-) True LOC110501615
XM_021579308.2 mRNA upstream 332797 25301819 ~ 25311767 (-) False LOC110501616
TU2051424 other downstream 110760 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 118893 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 641518 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1508285 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 1799282 23164481 ~ 23169363 (-) True G1790280
TU2051516 other upstream 16937 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 741551 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 2299640 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2772350 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2772350 27741372 ~ 27743599 (-) True LOC110501685

Expression Profile