RNA id: TU2051505



Basic Information


Item Value
RNA id TU2051505
length 234
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1792422
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24971061 ~ 24971294 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atgttaacatgcatgaaaccaaggattttacggttacagaagtcaacaaatgagagcacctggggagtgggagtggagctaggcactgcagggcctggattaacctctcctgggtagggggcagtattttcacctccggatgaaaagcgtgcccaaagtaaactgcctgttactcaggaccagaagctaggatatgcaaataactagtagatttggatagaaaacactctgaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2051502 lncRNA downstream 1271 24969579 ~ 24969790 (-) True G1792419
TU2051501 lncRNA downstream 2039 24968645 ~ 24969022 (-) True G1792418
TU2051497 lncRNA downstream 12113 24958706 ~ 24958948 (-) True G1792414
TU2051491 lncRNA downstream 25184 24945643 ~ 24945877 (-) True G1792408
TU2051485 lncRNA downstream 29874 24940977 ~ 24941187 (-) True G1792402
TU2051511 lncRNA upstream 4929 24976223 ~ 24976662 (-) True G1792428
TU2051512 lncRNA upstream 5407 24976701 ~ 24977207 (-) True G1792429
TU2051529 lncRNA upstream 32429 25003723 ~ 25003947 (-) True G1792446
TU2051531 lncRNA upstream 40306 25011600 ~ 25013698 (-) True G1792448
TU2051547 lncRNA upstream 64033 25035327 ~ 25035791 (-) True G1792462
XM_021579292.2 mRNA downstream 186059 24779405 ~ 24785002 (-) True LOC110501608
NM_001124564.1 mRNA downstream 192126 24774718 ~ 24778935 (-) True tnfsf13b
XM_036958970.1 mRNA downstream 215211 24519574 ~ 24755850 (-) False LOC110502073
XM_021579294.2 mRNA upstream 128147 25099441 ~ 25149856 (-) False LOC110501610
XM_036959587.1 mRNA upstream 191895 25163189 ~ 25176805 (-) False LOC110501612
XR_005038964.1 mRNA upstream 259967 25231261 ~ 25234195 (-) True LOC118943630
XM_021579307.2 mRNA upstream 302574 25273868 ~ 25278632 (-) True LOC110501615
XM_021579308.2 mRNA upstream 330525 25301819 ~ 25311767 (-) False LOC110501616
TU2051424 other downstream 113176 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 121309 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 643934 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1510701 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 1801698 23164481 ~ 23169363 (-) True G1790280
TU2051516 other upstream 14665 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 739279 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 2297368 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2770078 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2770078 27741372 ~ 27743599 (-) True LOC110501685

Expression Profile