RNA id: TU2051511


Basic Information

Item Value
RNA id TU2051511
length 440
lncRNA type intronic
GC content 0.44
exon number 1
gene id G1792428
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24976223 ~ 24976662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatttctgatcagtcttctccttgtatgagctgaaattttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttattcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051505 lncRNA downstream 4929 24971061 ~ 24971294 (-) True G1792422
TU2051502 lncRNA downstream 6433 24969579 ~ 24969790 (-) True G1792419
TU2051501 lncRNA downstream 7201 24968645 ~ 24969022 (-) True G1792418
TU2051497 lncRNA downstream 17275 24958706 ~ 24958948 (-) True G1792414
TU2051491 lncRNA downstream 30346 24945643 ~ 24945877 (-) True G1792408
TU2051512 lncRNA upstream 39 24976701 ~ 24977207 (-) True G1792429
TU2051529 lncRNA upstream 27061 25003723 ~ 25003947 (-) True G1792446
TU2051531 lncRNA upstream 34938 25011600 ~ 25013698 (-) True G1792448
TU2051547 lncRNA upstream 58665 25035327 ~ 25035791 (-) True G1792462
TU2051601 lncRNA upstream 115606 25092268 ~ 25093244 (-) False G1792509
XM_021579292.2 mRNA downstream 191221 24779405 ~ 24785002 (-) True LOC110501608
NM_001124564.1 mRNA downstream 197288 24774718 ~ 24778935 (-) True tnfsf13b
XM_036958970.1 mRNA downstream 220373 24519574 ~ 24755850 (-) False LOC110502073
XM_021579294.2 mRNA upstream 122779 25099441 ~ 25149856 (-) False LOC110501610
XM_036959587.1 mRNA upstream 186527 25163189 ~ 25176805 (-) False LOC110501612
XR_005038964.1 mRNA upstream 254599 25231261 ~ 25234195 (-) True LOC118943630
XM_021579307.2 mRNA upstream 297206 25273868 ~ 25278632 (-) True LOC110501615
XM_021579308.2 mRNA upstream 325157 25301819 ~ 25311767 (-) False LOC110501616
TU2051424 other downstream 118338 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 126471 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 649096 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1515863 23432994 ~ 23460360 (-) True LOC110501997
TU2049161 other downstream 1806860 23164481 ~ 23169363 (-) True G1790280
TU2051516 other upstream 9297 24985959 ~ 24986268 (-) True G1792433
TU2052534 other upstream 733911 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 2292000 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2764710 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2764710 27741372 ~ 27743599 (-) True LOC110501685

Expression Profile