RNA id: TU2051602


Basic Information

Item Value
RNA id TU2051602
length 1003
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1792509
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25092268 ~ 25094151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGCTgcttgtgtgtgcatgcttgtgtgtctctatgtgtgtatGACTGCTGTGTAAGTAGCCTGCTCTGTATGAGCGTGTTTCATACCAGTGAGACGCTGTGACTCTCACGGCCAGACATGTGGTCGTGGTTGTGTTTTTCTGCTGCTGTGCTGcagtgcatgtgtttgtgttgctCTGCAGCGGTAAAGGGCCCTGGATGTTTACATACGCTTCAGAGTGTCTCGTTTTCCGTTCTGGCTTAGGCTACACAGCTCTCTGTTGGGAGAGGCCCaacctgctctgcctctctctttctcctgtgccAGCACTGATATATAGCTATTATGATTGTTGTTACAGCTACTGCCCGATGTTTCTGACTTGGCAGAGACACAGAAGATGCGCTATCGCTCCACTTGAGGTTTGTCTGGTTTGCATGTAGGCTTTTGCAGATGTTCtaaatgtatgtgtgtttttctgtgtgcatgtgtgcgtgcaggGCCGGCCCTAGGCGTAAGCAACATAAGCGATCGCTTAGGGTCCCCGGCCTCTAGGGGCCTCGACCTAAAACATTTTTAGGAAATCTGTCTGGATCTCAACTTACTGTCGTAGTAGAATAGTAATGTAGAATAGTAATAGTAGAATAGTAATGTAGAATAGTAATAGTAGAATAGTAATGTAGAATAGTAATGTAGAATAGTAATAGTAGAATAGTAATGTAGAATAGTAATGTAGAATAGTAATGTAGAATAGTAATAGTAGAATAGTAATAGTAGAATAGTAATGTAGAATAGTAATGTAGAATAGTAATAGTAGAATACAATTTCGAaacttggttgtgcatcagcattttttttcttgttatgtcagtcactgacagtctagtgactataaaaaaaatataacatttttgtAGCCTGACGGCCATCAGCTAAccttttttagattggtaaatcagtctagccagctatctaaacttgtagacctccagggggcccccattgattttccCTCAccctca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051547 lncRNA downstream 56477 25035327 ~ 25035791 (-) True G1792462
TU2051531 lncRNA downstream 78570 25011600 ~ 25013698 (-) True G1792448
TU2051529 lncRNA downstream 88321 25003723 ~ 25003947 (-) True G1792446
TU2051512 lncRNA downstream 115061 24976701 ~ 24977207 (-) True G1792429
TU2051511 lncRNA downstream 115606 24976223 ~ 24976662 (-) True G1792428
TU2051556 lncRNA upstream 1341 25095492 ~ 25096562 (-) True G1792471
TU2051557 lncRNA upstream 6284 25100435 ~ 25101387 (-) True LOC110501610
TU2051607 lncRNA upstream 11369 25105520 ~ 25105755 (-) True G1792514
TU2051624 lncRNA upstream 35320 25129471 ~ 25130521 (-) True G1792530
TU2051625 lncRNA upstream 41029 25135180 ~ 25135579 (-) True G1792531
XM_021579292.2 mRNA downstream 307266 24779405 ~ 24785002 (-) True LOC110501608
NM_001124564.1 mRNA downstream 313333 24774718 ~ 24778935 (-) True tnfsf13b
XM_036958970.1 mRNA downstream 336418 24519574 ~ 24755850 (-) False LOC110502073
XM_021579294.2 mRNA upstream 5290 25099441 ~ 25149856 (-) False LOC110501610
XM_036959587.1 mRNA upstream 69038 25163189 ~ 25176805 (-) False LOC110501612
XR_005038964.1 mRNA upstream 137110 25231261 ~ 25234195 (-) True LOC118943630
XM_021579307.2 mRNA upstream 179717 25273868 ~ 25278632 (-) True LOC110501615
XM_021579308.2 mRNA upstream 207668 25301819 ~ 25311767 (-) False LOC110501616
TU2051516 other downstream 106000 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 234383 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 242516 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 765141 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1631908 23432994 ~ 23460360 (-) True LOC110501997
TU2052534 other upstream 616422 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 2174511 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2647221 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2647221 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2886513 27980664 ~ 27981379 (-) True G1795850

Expression Profile