RNA id: TU2051556


Basic Information

Item Value
RNA id TU2051556
length 1071
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1792471
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25095492 ~ 25096562 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcgtcagctggagtggtgtaaagctggctgccattggactctggagcagtggaaatgcgttcctggagtgatgaatcacgctttaccatctggcagtccaatggacaaatctggatttggcggatgcctggagaatgctacctgccccaatgcatagtgccaactgtaaagtttggtggaggaggaacaatggtctggggctgtttttcatggttcgggctacgcccctttgttccagtgaagggaaatcttaacgctacagcataaccttacattctagacgattccgtGCATcctactttgtggcaacagtttgggaaaggccctctcctgtttcagcatgacaataccaccgtgcacaaagcgaggtccatacagaaatggtttgtcgagatcagtgtgaaaAAACTTGACAGGCCtaaacagagccctgacctcaaccccatcaaacacctttgggatgaattggaatgccgactgcaagacaggcctaatcgcccaacatcaacgcccaacctcactaatgctctcatGGCTGAAtcgaagcaagtccctgcagcaatgttccaacatctagtggaaagccgttccagaagagtgaaggctgttatagcagcaaagaggggaccaactccatattaatgcccatgattttgtaatgagatgttcgacgagcagctgtccacatactcCGATCATTATACACATTATAAACTCTTCCAATGTGCTGTAGACTGAACAGCCTGAGGAAGCGAATAGGAAGAAAACATAGTAGAAGTCCTCTAAAGGTTAGTGATAATGCAGGACTTGATTTCATATGGGAAAGCTATTAGAATAATATCCTTAGAAAAGGTCagtgtctgacacacacacaaaacaagacGCAATTCATTTGGTCCTCACAGTGGCATTTAAGTGCACCAAAAACACAGGATATGTCCGGTCAGACCCACTGTCACAGGGATTCGACAGATTCACAAACAATTTGCCCTTTATTATTTTCAGAAGTGAACAAAGGAAATGAAAATGACACCGAAAGTCATTTgcatgtacacacgcacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051602 lncRNA downstream 1341 25092268 ~ 25094151 (-) True G1792509
TU2051601 lncRNA downstream 2248 25092268 ~ 25093244 (-) False G1792509
TU2051547 lncRNA downstream 59701 25035327 ~ 25035791 (-) True G1792462
TU2051531 lncRNA downstream 81794 25011600 ~ 25013698 (-) True G1792448
TU2051529 lncRNA downstream 91545 25003723 ~ 25003947 (-) True G1792446
TU2051557 lncRNA upstream 3873 25100435 ~ 25101387 (-) True LOC110501610
TU2051607 lncRNA upstream 8958 25105520 ~ 25105755 (-) True G1792514
TU2051624 lncRNA upstream 32909 25129471 ~ 25130521 (-) True G1792530
TU2051625 lncRNA upstream 38618 25135180 ~ 25135579 (-) True G1792531
TU2051651 lncRNA upstream 67801 25164363 ~ 25164879 (-) True LOC110501612
XM_021579292.2 mRNA downstream 310490 24779405 ~ 24785002 (-) True LOC110501608
NM_001124564.1 mRNA downstream 316557 24774718 ~ 24778935 (-) True tnfsf13b
XM_036958970.1 mRNA downstream 339642 24519574 ~ 24755850 (-) False LOC110502073
XM_021579294.2 mRNA upstream 2879 25099441 ~ 25149856 (-) False LOC110501610
XM_036959587.1 mRNA upstream 66627 25163189 ~ 25176805 (-) False LOC110501612
XR_005038964.1 mRNA upstream 134699 25231261 ~ 25234195 (-) True LOC118943630
XM_021579307.2 mRNA upstream 177306 25273868 ~ 25278632 (-) True LOC110501615
XM_021579308.2 mRNA upstream 205257 25301819 ~ 25311767 (-) False LOC110501616
TU2051516 other downstream 109224 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 237607 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 245740 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 768365 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1635132 23432994 ~ 23460360 (-) True LOC110501997
TU2052534 other upstream 614011 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 2172100 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2644810 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2644810 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2884102 27980664 ~ 27981379 (-) True G1795850

Expression Profile