RNA id: TU2051624


Basic Information

Item Value
RNA id TU2051624
length 1051
lncRNA type intronic
GC content 0.42
exon number 1
gene id G1792530
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25129471 ~ 25130521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggttctcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttgcttttacgccaaacataacgttttgcatttttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttctacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaactacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggtctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggagatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatatggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggatgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051607 lncRNA downstream 23716 25105520 ~ 25105755 (-) True G1792514
TU2051557 lncRNA downstream 28084 25100435 ~ 25101387 (-) True LOC110501610
TU2051556 lncRNA downstream 32909 25095492 ~ 25096562 (-) True G1792471
TU2051602 lncRNA downstream 35320 25092268 ~ 25094151 (-) True G1792509
TU2051601 lncRNA downstream 36227 25092268 ~ 25093244 (-) False G1792509
TU2051625 lncRNA upstream 4659 25135180 ~ 25135579 (-) True G1792531
TU2051651 lncRNA upstream 33842 25164363 ~ 25164879 (-) True LOC110501612
TU2051652 lncRNA upstream 36902 25167423 ~ 25167652 (-) True G1792557
TU2051666 lncRNA upstream 60636 25191157 ~ 25191361 (-) True G1792571
TU2051618 lncRNA upstream 91344 25221865 ~ 25225823 (-) False G1792525
XM_021579292.2 mRNA downstream 344469 24779405 ~ 24785002 (-) True LOC110501608
NM_001124564.1 mRNA downstream 350536 24774718 ~ 24778935 (-) True tnfsf13b
XM_036958970.1 mRNA downstream 373621 24519574 ~ 24755850 (-) False LOC110502073
XM_036959587.1 mRNA upstream 32668 25163189 ~ 25176805 (-) False LOC110501612
XR_005038964.1 mRNA upstream 100740 25231261 ~ 25234195 (-) True LOC118943630
XM_021579307.2 mRNA upstream 143347 25273868 ~ 25278632 (-) True LOC110501615
XM_021579308.2 mRNA upstream 171298 25301819 ~ 25311767 (-) False LOC110501616
XM_021579309.2 mRNA upstream 171298 25301819 ~ 25311767 (-) False LOC110501616
TU2051516 other downstream 143203 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 271586 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 279719 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 802344 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1669111 23432994 ~ 23460360 (-) True LOC110501997
TU2052534 other upstream 580052 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 2138141 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2610851 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2610851 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2850143 27980664 ~ 27981379 (-) True G1795850

Expression Profile