RNA id: TU2051618


Basic Information

Item Value
RNA id TU2051618
length 3890
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1792525
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25221865 ~ 25265798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGACATCATACATTTCCAAGCAACAGCATCTTCCTTCATACGGGGGGAGCTGTGTTCACCTTTAATGTGGTTAGTTGCATTTCTGCATGTGAAGTGACTGACATTATGAAAAGCATGTTACCTGGTAGGACAGCCCTCCACACACATATTCAATGCTTACATCCCAGATCACAGCAGTCAATGTATGGAGTAGAAATAAACATCCGAACTAGTAGTGATGTGTATGACGATTCAGAGAAATACCAGACGATGCAATATGATAGCAAACCATGACAGTTTTCTCCTAAAAAGCAAATTAACCTTGACTGCTTCATGTCCTACGCTTATACAAGTTAATAAAATAAGGTCAGTATTTCATGAAGCTTGAATCTGCAGAGACCTAATAATACTGATGACctggccactttaaaatgtgttgGTGGCTGGGATTCAGAAGGAAagccccccctccacacacacattttatttttatacacCCCCTAGCAGTACTGGCAGCCATAACCAGCCATAATGAATTCCTCAGAAGGCACCCACAGAATCTCACCATTGCGTATTCTACTAAACATCACATCAAAACATCTGACCATTGAATCTGAAAACAGATTGCTGtcccaaatttcttgttaacaaactataattctggcaagtcggttaggacatctactttgtgcatgacacaaagtaattattccaacaattgtttacagattatttcacttacaattcactgtatcacaattccagtggttcagaagtttacatacactaagttgactgtgcctttaaacagcttggaaaattccagaaaactatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaattagaggtgtacccgtggatgcatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaatcaggcaagacctcagaaaaataactgtagacctccacaagtctggtttgtttttgggagcaatttccaaacgcatgtgggcaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaacgctcagccgtcataccactcaggaaggagacgcgttctgtctcctagagattaatgtactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccctgtgaaaaTGCTGAagcaaacaggtacaaaagtatctatatccacagtaaaacgagtcctataaatcaacataacctgaaacgcaactcagcaaggaagaagccactgctccaaaaccgccataaaaaaaccagactacggtttgcaactgcacatggggaaaaatatcaaactttttagagaaatgtcctctggtctggtgaaacaaaaacagaactgtttggccataatgaccatagttatgttcGGGGGGAAAAGGGGAGGCTTACAAcccggagaacaccatcccaaaatgatgtggatatattgaagcaacatctcaagaaagtttggtcgcaaatgggtcttcaaaatggacagtgatcccaagcatacttccaagttgtggcaaaatgacttaaggacaacaaattaaaggtattggagtgtcccctcgccccgacctgggcgcgaaccagggacgctctgcacacatcaacagtcaccatcGAAGCATCGTtgcccatcgctccacaaaagccacggcccttgcagagcaaggtgaaccactacttcaaggtctcagagcaagtgacgtcaccgattgaaacgccactagcgcgcaTCACCCACCGCTAACCAGCTAgcaatttcacatcggctacatgggcagaactgaaaaagcatgtgcgagcaaggaggcctacaaacctgactcagttacaccagcttggtcatgaggaatgggtcaaaatgctccctacttattgtgggaagcttgtggaaggctaccctaaatgtttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgaaagTAAACTTccgatccactgggaatgtgatgaaagaaataaaaagctgaaataaatctctttacaattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaaaacagggaattttactaggattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttttgacttcaactgtaggttcctgcctttctagggagtttttctaaGCTACAGTACTTCTACATCAACATTGCTTGCGTTTtcaggttttaggctgggtttctgtatagtactttgtgacatcggctgatgtgaaaggggctttataaatcaatttgattgattgatctgaaaacacacacacgctgacatTCTTACTTATAACCACATTTATTCATCCTCAAATGGATATAAAATAATTTTATCTGACCATGGTCTACCACACACTCTCCAACCCTGCTACAGTTATGTGTAAGAGGTCTACAGTATGTCTGAGATttgggcccagattcacaaaacaaTCTTTAAAAGGAAATGTATTCTTAAGTGCAATTTTTTCTTCACTTTATActgaaaaaaattacaaaaagttGCTATTCCTCAATAAAGTTATTGAAAATGTTCTTAAGTTTCTTCCTAAGGAAATTGTTAAGAAATGTGATTCTTGAAAATAAAGTCACTGGATTTCTTCTTGGAAATGTTCTTAATTCCGAGATAGCTAAAGCCTGCTCTTAAATGGATGGAAGTGAGAAAATAAGATGAAAGCAATTGAACATGTTTACTTGACTCAAACTTCATCTGAAAGTTCCAGTATTGATTGTTTTTAAATCCCCCACCCCCAATTTTCTCTCCAGTTATCGCAGTAAGAAATATGCTAATAAGATTGCCCTTGCCGGCAAGATAGCGAGCTAGTTCAGTTGCTTAGCGACAATCATCTTAAAAAAGAAAGTTTGTAAAAGATATGAGACGTTCGTGAGAAAAGCATGAATCTTAAGGATTTGTACTAACAAACCAGTTTTTTTTCTTAAGAAGCTTCTTAAGTTTTGCgtttgaagtgttttgtgaatctgggccctgGGGTTGAAAGCTTACAGATAGCCTATGAGGCTATGATAAATTAAGAGTACATTAAGAGTAGAATCAAAATAAGGTGTTCTGGGGGATTCAAACAGGGTAGGTCTTCAACAGGAGCTGCGTTGCAGTGGTCTAAAGTGGGACATTAAAGTGTAAAATCCAACACAATAACTTTACTCATCTGCATTCAGTGTATCGTAAGACATTAGGATCACTGAATACTAAAATGTATTTTCACTTCATTCAGAGTTTTCCCACAACCTCGGTCCATTAGGTCGTGAAAACCACATTCATCTTGGGAACATACTTTAAAATGGCACAATGAAACCAAGGCAGTTACAAGAACAAAATACTTCATGATAGATATGGATAACAATTAGGGTTGCCGGAGGACAAGGTTAGGTTCAGATCTGTTCGGTTAGGATCTGTGGTGATCATACTGTCCAGTATTCACAAAATAGTCTGAGTGGGTGTGCAGATCTAGAATCAGGTCTCCTCAGTCAATATTATCTTATTCATTACGATCTAAAAGGGAAATCTGAATGCATATCAGCACTTCTATTCTGAAACACTTCAAACTCGTGTATACGAACCATTGTGACTAAACAAAAGATGTTGTGTTGATGGATTCAGTTTCTCAGTGACCCTGTGATGTTGGTCATGACAGATTGTATTCTGTGCCGTCTTGAGGTGGGACTTGCTTCACTTCTGAAAGTGCAGTAGAATGTTGAGGAACAGTTGCTGAGTGGCTGAGTTTCACTTCCTCCTTTTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051666 lncRNA downstream 30504 25191157 ~ 25191361 (-) True G1792571
TU2051652 lncRNA downstream 54213 25167423 ~ 25167652 (-) True G1792557
TU2051651 lncRNA downstream 56986 25164363 ~ 25164879 (-) True LOC110501612
TU2051625 lncRNA downstream 86286 25135180 ~ 25135579 (-) True G1792531
TU2051624 lncRNA downstream 91344 25129471 ~ 25130521 (-) True G1792530
TU2051927 lncRNA upstream 73546 25299369 ~ 25311751 (-) True LOC110501616
TU2051928 lncRNA upstream 85993 25311816 ~ 25312063 (-) True G1792801
TU2051909 lncRNA upstream 118828 25344651 ~ 25361194 (-) False gsk3ba
TU2051907 lncRNA upstream 118856 25344679 ~ 25361194 (-) True gsk3ba
TU2052478 lncRNA upstream 422678 25648501 ~ 25649291 (-) True G1793311
XM_036959587.1 mRNA downstream 45060 25163189 ~ 25176805 (-) False LOC110501612
XM_021579294.2 mRNA downstream 72009 25099441 ~ 25149856 (-) False LOC110501610
XM_021579292.2 mRNA downstream 436863 24779405 ~ 24785002 (-) True LOC110501608
NM_001124564.1 mRNA downstream 442930 24774718 ~ 24778935 (-) True tnfsf13b
XM_036958972.1 mRNA downstream 494062 24523100 ~ 24727803 (-) False LOC110502073
XR_005038964.1 mRNA upstream 5438 25231261 ~ 25234195 (-) True LOC118943630
XM_021579307.2 mRNA upstream 48045 25273868 ~ 25278632 (-) True LOC110501615
XM_021579308.2 mRNA upstream 75996 25301819 ~ 25311767 (-) False LOC110501616
XM_021579309.2 mRNA upstream 75996 25301819 ~ 25311767 (-) False LOC110501616
XM_021579312.2 mRNA upstream 118853 25344676 ~ 25387472 (-) False gsk3ba
TU2051516 other downstream 235597 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 363980 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 372113 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 894738 24326729 ~ 24327127 (-) True G1791405
TU2049906 other downstream 1761505 23432994 ~ 23460360 (-) True LOC110501997
TU2052534 other upstream 484750 25710573 ~ 25711619 (-) True LOC110501627
TU2054267 other upstream 2042839 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2515549 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2515549 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2754841 27980664 ~ 27981379 (-) True G1795850

Expression Profile