RNA id: TU2051755


Basic Information

Item Value
RNA id TU2051755
length 2866
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1792653
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25303526 ~ 25306912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacaGCCTTAACTGTATgctatgtatttactgtatagtTATATTGAATAGTGCTTGATTGACAACGCAAccacgctagcgtcccacctggccaacatccggtgaaattgcagagtgctaAAAGTACAGAAATaatcataataaacattcataaaatatacaagtgttatacatcggcttaaagatgaacttcttgttaatccagccgctgtgtcagatttcaaaaaggctttacggcgaaagcataccatgcaattatctgaagACAGCGCCCtgcttacaaaagcatacaaacattttccagCCAAGTAGATTAGTCGCAAAGGTTTGAAATATCaataaaatgaatcccttacctttgatgatcttcttatggttgcactcacaagactccatgttacacaataaatgtttgttttgttcggtaaagtccCTCCTTATATACAaaaaactcagttttgttggtgcgttttgttcagtaatccactggctcaatggcggtcacaacaggcagacgaatAAATCCAAATTGTACCAGTAAAGTTtgtcgaaacatgtcaaactatgtTTTTTATTAATCCTCAGCCtttcaatgtcaacaaaacaaaggagatgatcgtggacttcaggaaacagcagagggagcagccatCTATAttcattgacgggacagtagtggagagggtggatagTTTTAATTcctggacaaactgaaatggtccacccacacagacagcgtggtgaagcaggcgcagcagcgcctcttcaacctcaggaggctgaagaaattaggcttgtcaccaaaaacacttacaaacttttacagatgcacaattgagagcatcctgtcagctgtatcatcgcctggtacggtaactgcaccgcccacaaccgtaaggctctccagagggtagtgaggtctgcacaacgcatcaccggggacaaactactggcccttcaggacatctacaccacccgatgtatcaggaaggccaaaaagatcatcaaggacaacaaccccccgagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtacaggtgcatcaaagcggggaccgagagactaaaaaacagcttctatctcaaggccatcagactgttaaacatccatcactaacattgagtggctgctgccaacatactgactcatctctagccactttaataatgaaaacatgtatgtaataaatatatcactagccactttaaacaatgccactttatataatgtttacataccctacattactcatttcttaaaactgcattgttggttaagggcttgtaaattagcatttcactataaggtctactgttgtattcggcgcatgtaacaaataacatttgatttgatttaaagaaaATCTAAAGAATAAATAGTTTCATCTGAGCAACTGGcttaatcctattctttaactattatttttggtttagttgggGACGTAAATCCAACATATAATTTGTTAACTTGTCAACAATttaataggctatttactgtattgcaaaagtgaattgtgtttggttgtcaacgcaacatTTGAggggtattcagaccccttgacttttttacacattttgttaggttacagccttattctacaattgattaattacaccataaagacaaagcaaaaatgtaAAATTTTTGCTCATttctaaaatttaaaaaatgaaatattcagtactttgttgaagctactttggcagcaattacagccctcaagtcttcttgggtatgacgctacaaaattggcacacctgtatttggggagtttttcccattcttctctgcagatcctctcaagctctgtcaagttggatgggaagtgttgctgcacagctattttcagatctttCCATAGatatttgatcgggttcaagtctgggctctggctgggccactcaaggacattcagagacttgtcccatagCCACTCCTGctttttcttggctgtgtgcttagggtctttgtcctgttggaaggtgaaacttcgccccagtctgaggtcctgagcgaaATGGGGCagattttcattaaggatctctctgtactttgctgcgttcatctttgccttgatcttgactagtctcccagtctctgccactgacaaacatccccacagcatgatgctgccaccaccatgcttcacagtagggatggtgccagggttcctccagatgtgatgcttggcattcaggccaaagagttcaatcttgctttcatcagaccagaaaatcttgtttctcatggtctgagagtccttaggtgccttttggcaaactccaagcatgctgtcatgtgcatttactgagaagtggcttctgtctggccattctactataaaggcctgattggttgagtgctgcagagatggttgtccttctggaaagttatctcatctccacaaaggaactctagagctctgtcagagtgaccattgggatcTTGGTCCCCTCccgtccctgaccaaggccctccctcccccgattgctcagtttggcctggctgccagctctaggaagtcttaggggttccaaacttcttccatttaagaatgatggaggccactgtcttcttggggactttcaatgctttagaaatgttttggtacccttccccagatctgtgcctcgacacaattctttctttgagctctacgggcaattcctttgacctcatggcttggtttctgtctgacattcactgtcaactgtgggacctcatatagacaggtatgtgcctttccaaatgatgtacaaacaattgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaggatgatcaattgacaCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051371 lncRNA upstream 111740 25191546 ~ 25191786 (+) True G1792294
TU2051367 lncRNA upstream 116318 25187004 ~ 25187208 (+) True G1792290
TU2051366 lncRNA upstream 117665 25185578 ~ 25185861 (+) True G1792289
TU2051361 lncRNA upstream 122557 25180769 ~ 25180969 (+) True G1792284
TU2051357 lncRNA upstream 128358 25174865 ~ 25175168 (+) True G1792280
TU2051754 lncRNA downstream 1048 25307960 ~ 25309055 (+) True G1792652
TU2051748 lncRNA downstream 37767 25344679 ~ 25346795 (+) False G1792647
TU2051749 lncRNA downstream 37767 25344679 ~ 25361506 (+) True G1792647
TU2051830 lncRNA downstream 91750 25398662 ~ 25446620 (+) True G1792712
TU2051846 lncRNA downstream 117922 25424834 ~ 25434727 (+) True G1792728
XM_021579302.2 mRNA upstream 80050 25193435 ~ 25223476 (+) False LOC110501614
XM_036958973.1 mRNA upstream 80050 25193436 ~ 25223476 (+) False LOC110501614
XM_021579300.2 mRNA upstream 80050 25193704 ~ 25223476 (+) False LOC110501614
XM_021579299.2 mRNA upstream 80050 25194015 ~ 25223476 (+) False LOC110501614
XM_036958974.1 mRNA upstream 80050 25194015 ~ 25223476 (+) False LOC110501614
XM_036958975.1 mRNA downstream 18319 25325231 ~ 25333857 (+) True cfap91
XR_005038801.1 mRNA downstream 94567 25401479 ~ 25407741 (+) True LOC118943581
XM_021579989.2 mRNA downstream 257756 25564668 ~ 25587687 (+) True LOC110502118
XM_036958983.1 mRNA downstream 312266 25619178 ~ 25651263 (+) False LOC110501624
XM_036958984.1 mRNA downstream 312268 25619180 ~ 25651263 (+) False LOC110501624
TU2051751 other upstream 6969 25294546 ~ 25296557 (+) True G1792649
TU2051116 other upstream 289871 25007175 ~ 25013655 (+) True LOC110501609
TU2051120 other upstream 454182 24848966 ~ 24849344 (+) False LOC110501609
TU2051105 other upstream 460241 24842942 ~ 24843285 (+) True G1792040
TU2050548 other upstream 892813 24394068 ~ 24410713 (+) True LOC110501605
TU2052189 other downstream 424414 25731326 ~ 25731754 (+) True G1793045
TU2052918 other downstream 1008914 26315826 ~ 26316243 (+) True G1793717
TU2054765 other downstream 2596670 27903582 ~ 27912875 (+) True G1795411
TU2054839 other downstream 2730016 28036928 ~ 28038078 (+) True LOC110501693
TU2054913 other downstream 2784653 28091565 ~ 28092116 (+) True G1795550

Expression Profile