RNA id: TU2052544


Basic Information

Item Value
RNA id TU2052544
length 455
lncRNA type intronic
GC content 0.38
exon number 1
gene id G1793374
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25733072 ~ 25733526 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctctgtcaagttgatcattgctagacagccatttttaagtcttgtcatagattttcaagccaatttcaAAACTAACTAGGCCACTCTGGAACATTCAATGCCGTCTTGGTATGcgactccagtgtagatttagccttgtgttttaagttattgtttttgtcctgctgaaacagtgtctgttggaaagcagagtgaaccagggtttcctctaggattttgcctgtgcttatattgaccgatgacaagcatacccataacatgatgcagacagcacaatgtttgaaaatatgaagtggtactcagtgatggtttggatttgccccaaacaatgctttgtattcaggacaaaaagcaggatgcatgttgtgaaatatttgtattctgtaaagGTTTTCTTCTTTCAACTTTGTCATTTTACGTTAGTactgtgaagtaactacaatgttgatccatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2052530 lncRNA downstream 22562 25709636 ~ 25710510 (-) False LOC110501627
TU2052508 lncRNA downstream 56602 25676063 ~ 25676470 (-) True G1793339
TU2052478 lncRNA downstream 83781 25648501 ~ 25649291 (-) True G1793311
TU2051909 lncRNA downstream 371878 25344651 ~ 25361194 (-) False gsk3ba
TU2051907 lncRNA downstream 371878 25344679 ~ 25361194 (-) True gsk3ba
TU2052545 lncRNA upstream 576 25734102 ~ 25734356 (-) True G1793375
TU2052546 lncRNA upstream 3527 25737053 ~ 25737347 (-) True G1793376
TU2052547 lncRNA upstream 4003 25737529 ~ 25737788 (-) True G1793377
TU2052550 lncRNA upstream 7175 25740701 ~ 25741033 (-) True G1793380
TU2052531 lncRNA upstream 72891 25806417 ~ 25807803 (-) True G1793361
XM_036958986.1 mRNA downstream 5172 25709599 ~ 25727900 (-) False LOC110501627
XM_021579319.2 mRNA downstream 74707 25653479 ~ 25658365 (-) True LOC110501625
XM_021579317.2 mRNA downstream 229221 25445076 ~ 25503851 (-) True LOC110501623
XM_021579316.2 mRNA downstream 288969 25425372 ~ 25444103 (-) True LOC110501622
XM_021579313.2 mRNA downstream 316732 25389774 ~ 25416340 (-) True LOC110501620
XM_036958988.1 mRNA upstream 36407 25769933 ~ 25789301 (-) False LOC110501630
XM_036958989.1 mRNA upstream 36407 25769933 ~ 25789301 (-) False LOC110501630
XM_036958990.1 mRNA upstream 36407 25769933 ~ 25789301 (-) True LOC110501630
XM_036958991.1 mRNA upstream 58292 25791818 ~ 25799766 (-) False LOC110501631
XM_021579329.2 mRNA upstream 58292 25791818 ~ 25799792 (-) True LOC110501631
TU2052534 other downstream 21453 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 746804 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 875187 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 883320 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 1405945 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 1535136 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2007846 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2007846 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2247138 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 2276129 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile