RNA id: TU2052547


Basic Information

Item Value
RNA id TU2052547
length 260
lncRNA type intronic
GC content 0.40
exon number 1
gene id G1793377
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25737529 ~ 25737788 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTAAGTATGCGGAACAGTCGAAGAGTTCACTGTAAACATTTGACATGGCTCACATTCACAAGGAACAAGAGCTCACtcataaatgtgtgtgtgcgtatgaatGTGTTTGTCTATGTACAGGTAacagccaaaataaaggaaacaccaacataaagtgtcttaatagggtgttgagCCAGAACAACTTCAATGCACCTcagcatagattctacaagtgtctgaaactctattggagggatgtgacaccattcttccaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2052546 lncRNA downstream 182 25737053 ~ 25737347 (-) True G1793376
TU2052545 lncRNA downstream 3173 25734102 ~ 25734356 (-) True G1793375
TU2052544 lncRNA downstream 4003 25733072 ~ 25733526 (-) True G1793374
TU2052530 lncRNA downstream 27019 25709636 ~ 25710510 (-) False LOC110501627
TU2052508 lncRNA downstream 61059 25676063 ~ 25676470 (-) True G1793339
TU2052550 lncRNA upstream 2913 25740701 ~ 25741033 (-) True G1793380
TU2052531 lncRNA upstream 68629 25806417 ~ 25807803 (-) True G1793361
TU2052525 lncRNA upstream 73547 25811335 ~ 25813715 (-) True G1793356
TU2052608 lncRNA upstream 181482 25919270 ~ 25919512 (-) True G1793433
TU2052786 lncRNA upstream 382797 26120585 ~ 26120802 (-) True G1793593
XM_036958986.1 mRNA downstream 9629 25709599 ~ 25727900 (-) False LOC110501627
XM_021579319.2 mRNA downstream 79164 25653479 ~ 25658365 (-) True LOC110501625
XM_021579317.2 mRNA downstream 233678 25445076 ~ 25503851 (-) True LOC110501623
XM_021579316.2 mRNA downstream 293426 25425372 ~ 25444103 (-) True LOC110501622
XM_021579315.2 mRNA downstream 336553 25396050 ~ 25400976 (-) True LOC110501621
XM_036958988.1 mRNA upstream 32145 25769933 ~ 25789301 (-) False LOC110501630
XM_036958989.1 mRNA upstream 32145 25769933 ~ 25789301 (-) False LOC110501630
XM_036958990.1 mRNA upstream 32145 25769933 ~ 25789301 (-) True LOC110501630
XM_036958991.1 mRNA upstream 54030 25791818 ~ 25799766 (-) False LOC110501631
XM_021579329.2 mRNA upstream 54030 25791818 ~ 25799792 (-) True LOC110501631
TU2052534 other downstream 25910 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 751261 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 879644 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 887777 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 1410402 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 1530874 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 2003584 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2003584 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2242876 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 2271867 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile