RNA id: TU2052525


Basic Information

Item Value
RNA id TU2052525
length 2381
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1793356
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25811335 ~ 25813715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgtaacgtaacaaaatgtgggaaaagtcaaggggtctgaatactttccgaatgcactgagtatacaaaacattaagaacatctgctctttccgtTACATAGACTGTCCAGGTGAATCTAGGTGTAAGGTATGATCCCTTCTTGATTtcagttgttaaatccactttgtttattgtagatgaaggggagaagacaggttaaagaaggatttttagccttgagacaattgagatatagattgtgtatgtgtgccattcagagagaggggggggggggtgttcctattaggaaggtattcctaatgttttgtatactttttaaaaACGTTTATTTTGTTCCATGACCATGGTGGTGTTGTGGAAATTCTTGCACAGGGACACTCTAGGTCAATCtggtagctggttgagagaacgcctaGAGcgtgcaaggctgtcatcaaggcaaagggtggctattagaagaatctcaaatataaaatatattttgatttgtttaacacttttttggttacaacatgattccatatgtgttatttcatagttttgatgtcttcactattattctacaatgtagaaaatagtaaaaataaagaaaaaccccagaatgagtaggtgttctaaaacttttgaccggtagtgtacatgaAACTCCACTGATGAGACATGTTATCGTCATATAATCAAAATGAGTCATGTTACCCTCAGAGGTGTTATCCTTGTTACAAATCGAGACATGTAATCTAAACATGTTTTCCTTGTTACTAATCGAGACATCCCCTGAGACATGATGTCTCTTAAGAGATTTCTGACACATGTTAACCTCTACTGTAGATAACGTTATAGATCAGCTCACACAGAACTGGCAAACTCAGCTCACATTCACTCCATATTCACACTTACTAGTCCCCTGACAGCTCTCATTCACTAAATACTTAATAGCTCAATTTCAATCCTCTTATTGTCCAAATTTCAATCAGCTTATTATCCAGATGTCAATCTTAATACTAATCATTTCAATATATTTCTTATCCACATTTCTATCAGCTTGATATCAAATTTCAAACTTATTATCCAAATTTCAGTTTAATATGTAATTTCTCAAAATCACACAACTTTCACATTCACCTAGTACTATTACCCATGTGCATCTTCAACGATTCTCTTGTCATTACTTGCTATACACCTTATGTATCGTCAACGGTTCTCTTGCCACTACTTGCTTTACATATAAATAACACCCTATATTCAAAAATGCCTTGTGTTATTTTGTAGTGGCTGCTGACCACATAGACATTTCTTCTAAATGCCTAGAGTCAGCTGTCAGCGGGGCTTTCCATGGTACCGTCACGCCCTCGTCCTAGTTCTCATAAGACTTGTAAATAGCCTCCTCTCTATAAGACTGGGTACCTTTTTTATGTGTTACTCGCCTTGATTTTATTCTTCATCATTTATTTTTAtactaatttatttaaattgacttacCAGTTGCCGTCCCTCAATTGTTTGTAAATAATGTGTCTCCTCCTGGGCAGCTCAcagccaaattcaaattaaattataaaaatatttcattttcatgaaatcacaagtgcaatatagcaaaacacagattagcttgttgttaatccccctggtgtgtcagatttcaataaagcttttcggtgaaagcataccaagcgtttatgtaagaacatctctctcagtagacaaaatattacaaacagctagcagccaagtagattggtcacgaaagtcagaagagcaataaattaaatcacttaccttggatgaacttcggatgtttgcactcaccagactcccagttacacaataaatgttccttttgttccataaagattattttatatccaaaatacctccatttgtttggcgcgttatgttcagaaatccacaggctcgagggGTTCCGACGTGATGggttctttctcgctcatttttcaaaataaaagcctgaaactatgtctaaagactgttcacaccttgaggaagccataggaaaaggaatctggttgatataccTTTAAATGGAGgtaaggcatccaatggaacagagagctttcaggaaaaacagcacttccttgttggattttcctcaggttttcgcctgcaatatcagttctgttatactcacagacaatatttggacagttttggaaactttagagtgttttctatcctaatctgacaattatatgcatattctagtttcttggcctgagaaataggcagtttcaaatgggtaccgATAGgcagaaataggcagtttcaaaatactgccccctacactcaagaagttatgggtggaatgttattataAGTGTAattttgggatgcaaactcaaaataaaatacattttaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2052531 lncRNA downstream 3532 25806417 ~ 25807803 (-) True G1793361
TU2052550 lncRNA downstream 70302 25740701 ~ 25741033 (-) True G1793380
TU2052547 lncRNA downstream 73547 25737529 ~ 25737788 (-) True G1793377
TU2052546 lncRNA downstream 73988 25737053 ~ 25737347 (-) True G1793376
TU2052545 lncRNA downstream 76979 25734102 ~ 25734356 (-) True G1793375
TU2052608 lncRNA upstream 105555 25919270 ~ 25919512 (-) True G1793433
TU2052786 lncRNA upstream 306870 26120585 ~ 26120802 (-) True G1793593
TU2052787 lncRNA upstream 307663 26121378 ~ 26121658 (-) True G1793594
TU2052919 lncRNA upstream 310553 26124268 ~ 26126786 (-) True LOC110501642
TU2052921 lncRNA upstream 315816 26129531 ~ 26129770 (-) True G1793720
XM_021579329.2 mRNA downstream 11543 25791818 ~ 25799792 (-) True LOC110501631
XM_036958991.1 mRNA downstream 11569 25791818 ~ 25799766 (-) False LOC110501631
XM_036958988.1 mRNA downstream 22034 25769933 ~ 25789301 (-) False LOC110501630
XM_036959588.1 mRNA upstream 1106 25814821 ~ 25842967 (-) True LOC110501632
XM_021579331.2 mRNA upstream 30781 25844496 ~ 25891165 (-) True LOC110501633
XM_021579335.2 mRNA upstream 84045 25897760 ~ 25904394 (-) True LOC110501636
XM_021579339.2 mRNA upstream 131418 25945133 ~ 26001223 (-) False LOC110501638
XM_021579338.2 mRNA upstream 131418 25945133 ~ 26001224 (-) True LOC110501638
TU2052534 other downstream 99716 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 825067 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 953450 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 961583 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 1484208 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 1454947 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 1927657 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 1927657 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 2166949 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 2195940 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile