RNA id: TU2053320


Basic Information

Item Value
RNA id TU2053320
length 1814
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1794100
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26495978 ~ 26498010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATTTATTTGAGACATTGAGTGTGAATTCATTGTTTAGTCTTGGAAACAGATGACCATATCCTAGACTGGGGTAGGAGAGAGATCGCTGTCAGTCACAGCATTTTATTCCACACTGGGCTTCTCAACATGCCAAGATGGCCACCAACCATAGCCCGATTCTCAGTCTGACACAGACAATATTGGCTCTCAGCAAAAAAACATTAACGCcggattatttatatatataaaaaaaatgaaataaaatgctGGCCTTCCTCTTTCAGCACAAATCCAAACAAAAGCTGAGCCTACCTTCTGAAAATGAGCTTGACTGAAAGAATGGACCAGAAAAAGGCATTCTCAAATTGGTGGCTTGTTAGTTTGAAAAGACTGTCACGTTAGACCACGATAAGTACAAGTAGACATACTGCACACAAAGCTAAATCCATCATACAGGCAAGTCAAATAAGTCCAATCTGACCAATTAGATCAGGCGGTGGCAATGTCGGGACCTCAACCCAACTCAACCAATCACAGCTTAGAAGCTACAGTAGGACTTCCATTTGACCAATCAGAGCCTGGTTGATCAGTCAGCGTGTAACTTGGGTTTCCACCAGAACGATCACCCTGCCAAACAAAGGAGTACTGTAAGAAAAGCTCAGTAGATGACTTTATCCCATTCATCATTACCCATGGTCCATTCAGTTACGTTGAGGCACAGATCTCCATGGCTTAAAGTGTAAAGAGCCATCAGTGAAATGACTACAGTCCACTTCAGCACCACCTGACTTAACACACCAACCTGATACACACATAATTGTCAGAATAAAATAACATACATGGTAACAAAAGAAACATCTATCTGACGTGCATTAAATTGAATCAGGGTCTTGTAACCGAGTATCAGCAAAGAAAAGATGTGATAGCTCAAGCCAGTATTGAGCGTCTAGAAGATTACGTTAAAGTGTACTGAatataaacatatatacacagtatataagTCTGTGTATTTTTCTAATTTACATATCTTTACATTCATTAAATGTACATCCAGAAGGGAGAATATATGCTTATAAACCACGCTTTTTGCATATTTTCTTTTTAAAGTGAATTAAATGTCATTCAAACTTAGAGAAGTTAAACTTGGCAGTTTGGTGATTTTGGTTGACCTTGATGTTATTAAATGCGAGCACAGAACTACCGCATAGCGGCACCTTTTTTAACTCGGACTTTCAGAAGTCCGTTTGTGAAAAACCTGCAAGAAGTACTGTTTAAACAGGAACTATTCTCCACTGAGGACAATTTAAACATCACATAATTTGAGAATGCCAGTGCAGCAATAACAATGTCACTCTCCTCATGTCTCCCATATTGTTTCTCAACTCAGGACACCATAGGGCTAACATGTGCTTAGATAGGTTCTAAAACACAACCTTTCTCTCACAATTTCATGTCAAACACACCCAAAACACCAGTCTGTCTCTCCTCACACCTCTTCCTATTCAAACCCTCTTCCTCATGATTCAGACCATAGCCAGATAACAGCAGGGCACCTTTTAGGCACCTTTTAAAACATGGCTGAACAAAAAAAAATGGATTTCGTCCAGTATGTTAATTAACCCAGGAAATGTTCTTTGTGGTCTTAAACAGGAGACACAAATCCACAAACTGAGGATTGCCTCTGCCATTAAGTAGTTTGTGGTTGTTAAAATGTCTCCTGTGTCCGCCCTATGAGGATGTCCTCCATGTTGCCAGGCCTGCTTTGAGCTATGAGAGTGTTTGCTGATGGCAGGGTCCAACTTCAAAGTCACTGCCAGGATGCTATTTTCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2053321 lncRNA downstream 4457 26483269 ~ 26491521 (-) True G1794101
TU2053225 lncRNA downstream 93138 26398591 ~ 26402840 (-) True G1794009
TU2053156 lncRNA downstream 114445 26381278 ~ 26381533 (-) True G1793945
TU2053145 lncRNA downstream 122431 26373345 ~ 26373547 (-) True G1793934
TU2053085 lncRNA downstream 158057 26337690 ~ 26337921 (-) True G1793875
TU2053789 lncRNA upstream 21112 26519122 ~ 26581313 (-) True G1794528
TU2053788 lncRNA upstream 26060 26524070 ~ 26524927 (-) True G1794527
TU2053825 lncRNA upstream 98452 26596462 ~ 26597897 (-) True glra2
TU2053901 lncRNA upstream 213389 26711399 ~ 26712405 (-) False G1794633
TU2053900 lncRNA upstream 213534 26711544 ~ 26712490 (-) True G1794633
XM_021579348.2 mRNA downstream 48758 26388417 ~ 26447220 (-) True LOC110501646
XM_021579346.2 mRNA downstream 174893 26317235 ~ 26321085 (-) True LOC110501645
LOC110502076 mRNA downstream 196070 26294460 ~ 26299908 (-) True LOC110502076
XM_021579343.2 mRNA downstream 271181 26123770 ~ 26224797 (-) False LOC110501642
XM_021579344.2 mRNA downstream 271182 26123770 ~ 26224796 (-) False LOC110501642
XM_021579352.2 mRNA upstream 1593 26499603 ~ 26516319 (-) True LOC110501648
XM_021579356.2 mRNA upstream 36224 26534234 ~ 26567495 (-) True LOC110501651
XM_021579357.2 mRNA upstream 88628 26586638 ~ 26597980 (-) False glra2
XM_021579361.2 mRNA upstream 216687 26714697 ~ 26729795 (-) False LOC110501655
XM_021579359.2 mRNA upstream 216687 26714697 ~ 26752656 (-) False LOC110501655
TU2052534 other downstream 784359 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 1509710 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 1638093 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 1646226 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 2168851 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 770652 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 1243362 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 1243362 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 1482654 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 1511645 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile