RNA id: TU2053901



Basic Information


Item Value
RNA id TU2053901
length 1007
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G1794633
representative False

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26711399 ~ 26712490 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acctgttttcgctttgtcattatggggtattgtgtgttttataataaggctgtaacaaaatgtggaaaaagtcaagtggccTGAGtacttccgaaggcactgtatgtacgcATCATCTTCTGACATTCTTTTCAGTTATGACAATGTTTATGGGGGGAAGAAAGAAAAAATATTTGAGTTAGGCCGGTTCGATTTGACATTTAAAGTTACAGTAAAGCCTAGCATTGTTATCGAAACAATGATGTTGACATGACAGGCTTAAGTATTATTTCCATTCCTTAGTTAATTACTATTTCCCTGTCAACCCATTCACTGTAGGCTACAATACACTTATCTGACATACACCCTAGATCATAGAACTATCGTAGTGACATGACACACACTTGCCTCATCAACATCCTATCTTAATGAACCTGAGCACCTTTTTGGCAGCATCCCATCCCCAAGAAAGAAGACACATTGTCATCATCTGAAAGCTTGAATAGGTCTTTATTGCTCTTATTATTCATCTTAACATGAAGGAGTCAACATGTACCACTTGGCCACAGTTCCCTGAATTAGCATGTAAGTCTGCTACAGGCCAGAGTGTCATAGAGAGTCACATGCTCTGGGGTTCCAGTACCTAAAGCTCATTGTTGCAACATGTGTTTCCTCCcattcacatacagtacagtcaCCAAGGCaaaacatcaacatcacatcagGCCACAGTTCTTGTTCTCCATTCCCCAGATTCCATTTTGGCTTGAAATGACCCATGTTGACCTGTGAAGAAAGCAGCATCATAATTCAGAAACATAAGTTAACTCTCAATTATTTTGCCAATTGCTTTGGTCCCAGACAGAATACCTGAATCGCAACCTTATTTTTGtggatcttttttttttaaacaatcatTTTTAAGACATTTATTATATTTAACAGTTTTATTGTAGCACAAACGGTTGGATTTAAAGCACAGCAGTGATGAATATGAAAATAAATTATACTTGACATTGGAAAGTTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2053825 lncRNA downstream 113502 26596462 ~ 26597897 (-) True glra2
TU2053789 lncRNA downstream 130086 26519122 ~ 26581313 (-) True G1794528
TU2053788 lncRNA downstream 186472 26524070 ~ 26524927 (-) True G1794527
TU2053320 lncRNA downstream 213389 26495978 ~ 26498010 (-) True G1794100
TU2053321 lncRNA downstream 219878 26483269 ~ 26491521 (-) True G1794101
TU2053931 lncRNA upstream 48127 26760532 ~ 26760738 (-) True G1794663
TU2053953 lncRNA upstream 83343 26795748 ~ 26796885 (-) True G1794685
TU2054005 lncRNA upstream 146510 26858915 ~ 26859289 (-) True G1794736
TU2054039 lncRNA upstream 178326 26890731 ~ 26890949 (-) True G1794762
TU2054023 lncRNA upstream 184003 26896408 ~ 26964871 (-) False G1794748
XM_021579357.2 mRNA downstream 113419 26586638 ~ 26597980 (-) False glra2
XM_021579356.2 mRNA downstream 143904 26534234 ~ 26567495 (-) True LOC110501651
XM_021579352.2 mRNA downstream 195080 26499603 ~ 26516319 (-) True LOC110501648
XM_021579348.2 mRNA downstream 264179 26388417 ~ 26447220 (-) True LOC110501646
XM_021579346.2 mRNA downstream 390314 26317235 ~ 26321085 (-) True LOC110501645
XM_021579361.2 mRNA upstream 2292 26714697 ~ 26729795 (-) False LOC110501655
XM_021579359.2 mRNA upstream 2292 26714697 ~ 26752656 (-) False LOC110501655
XM_021579360.2 mRNA upstream 2292 26714697 ~ 26752657 (-) True LOC110501655
XM_036958998.1 mRNA upstream 93013 26805418 ~ 26854630 (-) False LOC110502078
XM_036958997.1 mRNA upstream 93013 26805418 ~ 26876379 (-) False LOC110502078
TU2052534 other downstream 999780 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 1725131 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 1853514 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 1861647 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 2384272 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 556257 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 1028967 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 1028967 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 1268259 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 1297250 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile