RNA id: TU2053931



Basic Information


Item Value
RNA id TU2053931
length 207
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1794663
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26760532 ~ 26760738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tacatatactccagaatgttatgaagagggaTCAGATTAATTGTAATCAATTGCAaattccctctttgccatgcaaattaactgaatccccccaaaaaacatttccactgcatttcagccctgccacaaaaggaccagctgacatgtcagtgattctctcgttgacacaggtgtgagtgttgatgaggacaaggttggagatcactc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2053900 lncRNA downstream 48042 26711544 ~ 26712490 (-) True G1794633
TU2053901 lncRNA downstream 48127 26711399 ~ 26712405 (-) False G1794633
TU2053825 lncRNA downstream 162635 26596462 ~ 26597897 (-) True glra2
TU2053789 lncRNA downstream 179219 26519122 ~ 26581313 (-) True G1794528
TU2053788 lncRNA downstream 235605 26524070 ~ 26524927 (-) True G1794527
TU2053953 lncRNA upstream 35010 26795748 ~ 26796885 (-) True G1794685
TU2054005 lncRNA upstream 98177 26858915 ~ 26859289 (-) True G1794736
TU2054039 lncRNA upstream 129993 26890731 ~ 26890949 (-) True G1794762
TU2054023 lncRNA upstream 135670 26896408 ~ 26964871 (-) False G1794748
TU2054056 lncRNA upstream 166174 26926912 ~ 26927297 (-) True G1794779
XM_021579360.2 mRNA downstream 7875 26714697 ~ 26752657 (-) True LOC110501655
XM_021579359.2 mRNA downstream 7876 26714697 ~ 26752656 (-) False LOC110501655
XM_021579361.2 mRNA downstream 30737 26714697 ~ 26729795 (-) False LOC110501655
XM_021579357.2 mRNA downstream 162552 26586638 ~ 26597980 (-) False glra2
XM_021579356.2 mRNA downstream 193037 26534234 ~ 26567495 (-) True LOC110501651
XM_036958998.1 mRNA upstream 44680 26805418 ~ 26854630 (-) False LOC110502078
XM_036958997.1 mRNA upstream 44680 26805418 ~ 26876379 (-) False LOC110502078
XM_036958999.1 mRNA upstream 44680 26805418 ~ 26913306 (-) True LOC110502078
XM_021579369.2 mRNA upstream 162102 26922840 ~ 26933846 (-) True LOC110501658
XM_036959005.1 mRNA upstream 172782 26933520 ~ 26936528 (-) False LOC118943583
TU2052534 other downstream 1048913 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 1774264 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 1902647 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 1910780 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 2433405 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 507924 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 980634 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 980634 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 1219926 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 1248917 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile