RNA id: TU2054023


Basic Information

Item Value
RNA id TU2054023
length 2723
lncRNA type read_through
GC content 0.47
exon number 4
gene id G1794748
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 26896408 ~ 26964871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACTGTACTTACCGAGTGCTGGAGGGCAAAAATCTCTGTCCATTTTACTACATCAAGAGTATTCTTCCTGAATTCAAGACCTCTCTTCCTGAATTCAAGACCTCCCCTCCTGAAATCAAAACCTACCTCATTAGGATACCACAGAGCTACACATAACAATACATGTCTCCAATAGAGgtcatacacagacagacaaagtgaCGGACGAACGGACGCTGACACATACCTTTCACTGTCTCCGACAAGTTTTTGTACGTTTTTTTTCATATCCAGAGGTTTTTGTGCTTGTGGTAGTACATTATGTTGTTGTAGTGTACTGAGAGAGCTATTAAACTGAGAGGATCCAACTAAGGGCACTAAAGATGGGGTCATATAGGCGCCATGAGTGGTAGGTGAAAGGGAGCTGAGGTGTCCGCCAGTAAGTGGTGCCTCAAAACTTAACCCCATTGATCTGGCTGAGCCTCCAAGAGGTGGTCCGCCTGCTGAAGAAGCCTCATATAAATCTGGAATGTAACATGCACTGGCTGTGGCCCCAAACAAAGAGCCGTGAGGTTGTCTGCTTTGAGAACCTGCCCTTCCGCCACCGAAACCAAACCCTGATGGGGGCGCAGAAGCAGGGACAACAGAAGGTTGCCAGTGGTCCATTTCCACTAGTCCACAATCCTTATCCTCAGATAAGCTATTATCCAAGGTCCACATTTTGCTAGTCTCACACATTGACGACTGTTCCACAGGATAGGCCTCTTGGGGTTTGGAAAGTAGCAGGTCCCCACCGGCTTGCAGTTCCGGGAAGGTTGCAGTATGGGAGATAGCCCCAACTCCAGGTCTGGCATGAACTCCCATCTCGTATCTAATCGCTCGAAACTCATTGGAGAcaagagcagagggaggaggaagagaaccTGAACCTCCGGCAAAGAAAGACTGCAGTCGAAATGGAGGAGGACCAGGAGAACTGAGGACAGgagcagggggtggaggaggaagagcatCTGAAACTGTGGCAGGGAAAGACTGCAGTCGAGATGGAGGAGGACCAGGAGAACTGAGGGCAGAagcagggggtggaggaggaaaaGCATCAGCAACAACGCAAGACTTGATCTGAagatgatgaacagagggaggaggacgAGGCACatcagcaacagagagagacttCTTCTGTGTCTCTACAGGGTCAAATGCCGAACCGGCACAAACCTTCCTGTGTCTGTCCGCCCGTCTAaagtctccctctctactcttcgCAAGCCTCACTATCTTTGGGAGAGAGTAGAAGGTCCCACACAGCTCAGGGATGAAATCCGTCTCCATAGCCATAGGCAGCATAGTGGTAGTAAGGTACGGGGTGCGTGGTATGCATTGGCTGCCTGAAAGCGTGTGGAGAgttggagaggaagaagaggacagagCCTCACTATGCATGAATTCCCGTAATTCAAAGTCCTGTAAAACAAAGACAAGAACAGTTCAGTGATTAAACTATGAATTGACAGGAATCATTTTTCTTTATAGTTAACAGCAAGAAAGAAGCAGATCACTACCAGGTCATCAAAGTACTCCATCTCTTCATCCGTCACAGCTCCTTCACTCTTCAAAGTCATATCTAAAGGTTCGGTAGCAGCGGACAAGGTCACTGGGCTGGCTGAGACCATATGGCCCATGAAGTAAGAGGAATTAAGTATCCTACCAAGAGGCACCTCATCCGTAGCCCTCTGATTGAGACATTTGGAACGTAAGTTCACAGATCCTTCCCATGATTCGTCATCCACCTGGAGTTGACCCATCAATTCATgctcctcccccatccccctctcctttagACATATTTTTCTGCATAAAACATGCCCTAGCCCACCATTCAGCAAGTTTGACATTGAGTCTGATCCAGAGTCCATCCCATCTCCCTCATATTCCTCCTGCTGCCAGCTAAGGTAAGGTAAGAAGTCGACGTCCTCGTCTGAGATCAGTTTGGGAACATCTGTGAAGCCCGCGTCAGGCTGCTCTGAGTCCTGGGAGAGAAAGAACGCATCAGAACATTGTATTTTTCTACATTTGTATTGAAGTATTGTCgatgtgtgtgcgcacacactAGCGTTTGGCAGACGTACCCTCTCCTCGATGGCAACAAAGCTGGTGAACTGAGACAGGATGGAGAACTCTTTGCTCAGCTCAATGATGAAGGACTTCATCACTGATTTCTTCCCCTGAGAGAATTGAtactatatatataaaacaaaaacTTTCCGTACACACAGAATAGGTACAGTGTACACACTCCATACTAGGGTTGTCATGATACCAGTACCGCAATActaggaaagaaggaaggaaggaaggaaggaaaacaAAACATGAAGCAGCCTTAATTTCCAGAGGAAAACACTCCTAATGTTGGTCAAAAACAGCCTTATGTTGTCACCCAGAGTCACATTtcttttccaagctatagcacacaatattttacacaaAGTAGGTGTTTAAAGGACCATTAGCCTGCTTTGTGTTTTCTTTTTTGGTAAGAAAAATCTGGTGTTGTAGTATAGCTATACTGGTTGTGACAACACTACTCCATTCACAATCTAATGTTCACACACACCTCATGTTCAGCCTCGTTGGTGTGAAGACTGCCATCCTCATAGTCTCTGATAACGGCCCTCGCTGTGAGCTTATGAAGGAACTgaaacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054039 lncRNA downstream 5459 26890731 ~ 26890949 (-) True G1794762
TU2054005 lncRNA downstream 37119 26858915 ~ 26859289 (-) True G1794736
TU2053953 lncRNA downstream 99523 26795748 ~ 26796885 (-) True G1794685
TU2053931 lncRNA downstream 135670 26760532 ~ 26760738 (-) True G1794663
TU2053900 lncRNA downstream 183918 26711544 ~ 26712490 (-) True G1794633
TU2054190 lncRNA upstream 146990 27111861 ~ 27114211 (-) True G1794904
TU2054168 lncRNA upstream 180917 27145788 ~ 27146680 (-) True G1794884
TU2054169 lncRNA upstream 182839 27147710 ~ 27148363 (-) True G1794885
TU2054225 lncRNA upstream 222543 27187414 ~ 27187624 (-) True G1794937
TU2054226 lncRNA upstream 223162 27188033 ~ 27188306 (-) True G1794938
XM_036958997.1 mRNA downstream 20029 26805418 ~ 26876379 (-) False LOC110502078
XM_036958998.1 mRNA downstream 41778 26805418 ~ 26854630 (-) False LOC110502078
XM_021579360.2 mRNA downstream 143751 26714697 ~ 26752657 (-) True LOC110501655
XM_021579359.2 mRNA downstream 143752 26714697 ~ 26752656 (-) False LOC110501655
XM_021579361.2 mRNA downstream 166613 26714697 ~ 26729795 (-) False LOC110501655
XM_021579372.2 mRNA upstream 184458 27149329 ~ 27186837 (-) False LOC110501663
XM_036959017.1 mRNA upstream 203804 27168675 ~ 27186838 (-) True LOC110501663
XM_021579376.2 mRNA upstream 375962 27340833 ~ 27364591 (-) False LOC110501665
XM_021579378.2 mRNA upstream 375962 27340833 ~ 27364591 (-) False LOC110501665
XM_021579375.2 mRNA upstream 375962 27340833 ~ 27364592 (-) False LOC110501665
TU2052534 other downstream 1184789 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 1910140 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2038523 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2046656 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 2569281 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 303791 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 776501 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 776501 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 1015793 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 1044784 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile