RNA id: TU2054190


Basic Information

Item Value
RNA id TU2054190
length 2166
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1794904
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27111861 ~ 27114211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTCACTTTCCATAACATCTTTATTGTCTCATTTTAAACATATTTACACGTctttttttgttcagtaaaaatacaaatacggaacacttttttcaaaatcaacatcctccCGGCGACTGACGGTGCCAAAGAACGCCTGGGCTTTCTCCCCAGACAGGAAGCAGTGATGATGTTAAGAGGTGTGACAGAGGAAAGAGGAATAGAGTGAGACAAGTGTTGTACAGGTGCTGCCAGGTTTCAAGACATGAGAAATTAGTGACAGAAACCAACCAATTAGCTAAGCAGCAACACAAATATAGTATGGCTTTATCGATTGGCAAGGTGAGTTGTTCTGTAATCAGCCCAACCCCAACATTATCCTCATCACTATTCCTTCATCATCATGGGTCTGCTAGAGCGACAGCTGGGTTTCTAGCAGACTGGTGTATGAGCTTGTGTATGAATAACAttttgtaaaataaaaatacattaaaaaaagtaTTGGCCAAAGGCGTCACACAGAGCAACACTTGATAAGGCTTTAAATTAATTGATACTTCCAACAAAAATGGTATTTCTTCCAGGGTACATTTCTATTTCGCAGTGTTACCGTCAGTCCCCTAAACCTAAAGTATATCCCCATCCACTCCAATGCACCAATCACAGATTCCTCACTAAACACAGCAGAGTTCCTTCCGTTCCATCTACTGTTGCAGAAACAACATTCATATGAAACACAAAAGGTCCATTAAGAACACAGCCCATAGAGAATGAATGGCATATCATTCAACATACTCATCGCACAGGTGACGGAACCCAAGTCCTAATATGCGAGTGGTGATTGGAATGAGAACAAGAAACAGTTTAGGTAGAACCCTATCAGTAGGGTGGGGAGTTGTTCCTGAATAGGCTATACCCACCAGGCTATACCCATCAGTGGTAGTGTTAGAGCAACAATATGGCTCCGTGTCAGTCATTTTAAAAGGAGTCAAAGACACAGAGATAATAAATGAAGGGCTTTGTGTCTTCAGCTCCTACAGTGCTGTAACTTCACTCCATTTTCCCTCTCAGTAATCCAAGCAACAAAGTGCATAACAATTTATCCACAGGGGCCATTTTATCAGCAGACAAGAATCACGGCCAAATCAAGACCTGTCCAATTTGCCTGTGGAGTGTTAGTGATTTATGGAAAGACAGGAACAGAAATTGACCAGGCAAGAGGAGTGACTGGAGAAGTGAAGAAATATGACAAGAAAGAGACGATGGAGGTGGAATGGAGTGATAAGACAaggttgagaggagagagagaagcagcatcGGTTGAATAGCAGCAACAAAATGATTTGAGGCCAGGCTAAGCTACAATATGTCACCTGCTAATgatgagagatggaaagagagaatgatagagaaagaacagaaatGGCAGAATGTAGCATAGAGAACGCAAGGGATATCAATTCCATTTCACAGGCCCACTTTAGAAAGGTGCCAGAGGGGGACGCATTAAGCCGTTGCTCCTATCCACAAAGCAACACTGATACAGTTCCAGGTCAAGAGAGTAAACAGAAAATGGCAGACGGACCAGGAGGGTCACATTGTTGTGTCCCCGCCAATCAGTGTCCAAAAGATAGaatgaaaaaaacaaaaatcaacaAACCCCACTGATCGCATAGTCTTCAGTTTTACTGTCAGTCTGACTGTCTGGAATATACATATCCCTTCAGAGAAGTCTGTCTGTTTGTTCGTTCAGACTCCATACACCCTCTCGCCCCTGTATGCGTCCGTTATGAGACAGTTTGGTGAAAACAAATCAAGCCTCCTGACAAAAAAGTCACATTACGAGGGCAATCACAAAAGCTGAACGCACCCACCGTCCTTCTGATCAGCAGAGAGCTATagaaagtgagagcgagagaatTAAAGAATAAGAAAGGGAGCTATTGTTCCAGTCCCCTCCACTCTACAATGGTCTGAGCTCTCTCCTTCTGCAGTCTGTAGTAGTgagagatggaggcagggaggcaAGGACGCATTGGTCCCCTGGAGGACCCCTGGTCTCTAccgctgggcctggctccctggGAGGGTGAGGTTGGCCAGGTGCAGTACCGGCAGGGGGTGGGCCTCCGTGTTGAACACCCAGCTCTCCAAAGGCATCAGGTCATCACTGGAGAACAACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054023 lncRNA downstream 146990 26896408 ~ 26964871 (-) False G1794748
TU2054020 lncRNA downstream 146990 26960988 ~ 26964871 (-) True G1794748
TU2054027 lncRNA downstream 167587 26936587 ~ 26944274 (-) True LOC118943583
TU2054013 lncRNA downstream 168665 26939764 ~ 26943196 (-) False LOC110501659
TU2054014 lncRNA downstream 168665 26939764 ~ 26943196 (-) True LOC110501659
TU2054168 lncRNA upstream 31577 27145788 ~ 27146680 (-) True G1794884
TU2054169 lncRNA upstream 33499 27147710 ~ 27148363 (-) True G1794885
TU2054225 lncRNA upstream 73203 27187414 ~ 27187624 (-) True G1794937
TU2054226 lncRNA upstream 73822 27188033 ~ 27188306 (-) True G1794938
TU2054207 lncRNA upstream 79108 27193319 ~ 27193737 (-) True G1794919
XR_002470233.2 mRNA downstream 168633 26939760 ~ 26943228 (-) False LOC110501659
XM_036959006.1 mRNA downstream 175177 26933520 ~ 26936684 (-) False LOC118943583
XM_036959005.1 mRNA downstream 175333 26933520 ~ 26936528 (-) False LOC118943583
XM_021579369.2 mRNA downstream 178015 26922840 ~ 26933846 (-) True LOC110501658
XM_036958999.1 mRNA downstream 198555 26805418 ~ 26913306 (-) True LOC110502078
XM_021579372.2 mRNA upstream 35118 27149329 ~ 27186837 (-) False LOC110501663
XM_036959017.1 mRNA upstream 54464 27168675 ~ 27186838 (-) True LOC110501663
XM_021579376.2 mRNA upstream 226622 27340833 ~ 27364591 (-) False LOC110501665
XM_021579378.2 mRNA upstream 226622 27340833 ~ 27364591 (-) False LOC110501665
XM_021579375.2 mRNA upstream 226622 27340833 ~ 27364592 (-) False LOC110501665
TU2052534 other downstream 1400242 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2125593 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2253976 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2262109 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 2784734 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 154451 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 627161 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 627161 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 866453 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 895444 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile