RNA id: TU2054225


Basic Information

Item Value
RNA id TU2054225
length 211
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1794937
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27187414 ~ 27187624 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAGTTCATAGCACGTtttctacaattctacacattttgccatggggcggagaaaAAAAATAGCAGGTACAGATAATTTCCTAcaacatctgtagccatgaaatgctttgaacacatcaacaccatcatcccagacaccctgggcCCACTCCTACTCACATCCTGCCTCAACAGACCCACAGATGAcaccatctctattgcactccacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054169 lncRNA downstream 39051 27147710 ~ 27148363 (-) True G1794885
TU2054168 lncRNA downstream 40734 27145788 ~ 27146680 (-) True G1794884
TU2054190 lncRNA downstream 73203 27111861 ~ 27114211 (-) True G1794904
TU2054020 lncRNA downstream 222543 26960988 ~ 26964871 (-) True G1794748
TU2054013 lncRNA downstream 244218 26939764 ~ 26943196 (-) False LOC110501659
TU2054226 lncRNA upstream 409 27188033 ~ 27188306 (-) True G1794938
TU2054207 lncRNA upstream 5695 27193319 ~ 27193737 (-) True G1794919
TU2054208 lncRNA upstream 13692 27201316 ~ 27203100 (-) True G1794920
TU2054240 lncRNA upstream 41648 27229272 ~ 27234648 (-) True G1794952
TU2054241 lncRNA upstream 42913 27230537 ~ 27231579 (-) True G1794953
XM_036959017.1 mRNA downstream 576 27168675 ~ 27186838 (-) True LOC110501663
XM_021579372.2 mRNA downstream 577 27149329 ~ 27186837 (-) False LOC110501663
XR_002470233.2 mRNA downstream 244186 26939760 ~ 26943228 (-) False LOC110501659
XM_036959006.1 mRNA downstream 250730 26933520 ~ 26936684 (-) False LOC118943583
XM_036959005.1 mRNA downstream 250886 26933520 ~ 26936528 (-) False LOC118943583
XM_021579376.2 mRNA upstream 153209 27340833 ~ 27364591 (-) False LOC110501665
XM_021579378.2 mRNA upstream 153209 27340833 ~ 27364591 (-) False LOC110501665
XM_021579375.2 mRNA upstream 153209 27340833 ~ 27364592 (-) False LOC110501665
XM_036959021.1 mRNA upstream 153209 27340833 ~ 27364592 (-) False LOC110501665
XM_036959022.1 mRNA upstream 153209 27340833 ~ 27364592 (-) False LOC110501665
TU2052534 other downstream 1475795 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2201146 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2329529 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2337662 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 2860287 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 81038 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 553748 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 553748 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 793040 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 822031 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile