RNA id: TU2054226


Basic Information

Item Value
RNA id TU2054226
length 274
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1794938
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27188033 ~ 27188306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTGTGTTGTTGATTTACAGAAAATATCTCCTCAGCCATATATTTGACCATATCTAAATGCCCAAATTTACCGACAATATATAAAACTCTCGAGGATTTACATACAATTCCAACCGCTCCTCTGAGTGGCGTTGGCCTATGCGTATTACACAAATGTTGTGATTTATCGTGACCCTAACCATTATTCCGTAatatttttgttgtgtgtgtgtcttctacgGAGGGATAGGTGTGTTATTTGTCGTGATCAAAGATTTAATTtcatattgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054225 lncRNA downstream 409 27187414 ~ 27187624 (-) True G1794937
TU2054169 lncRNA downstream 39670 27147710 ~ 27148363 (-) True G1794885
TU2054168 lncRNA downstream 41353 27145788 ~ 27146680 (-) True G1794884
TU2054190 lncRNA downstream 73822 27111861 ~ 27114211 (-) True G1794904
TU2054020 lncRNA downstream 223162 26960988 ~ 26964871 (-) True G1794748
TU2054207 lncRNA upstream 5013 27193319 ~ 27193737 (-) True G1794919
TU2054208 lncRNA upstream 13010 27201316 ~ 27203100 (-) True G1794920
TU2054240 lncRNA upstream 40966 27229272 ~ 27234648 (-) True G1794952
TU2054241 lncRNA upstream 42231 27230537 ~ 27231579 (-) True G1794953
TU2054244 lncRNA upstream 45218 27233524 ~ 27287445 (-) True G1794955
XM_036959017.1 mRNA downstream 1195 27168675 ~ 27186838 (-) True LOC110501663
XM_021579372.2 mRNA downstream 1196 27149329 ~ 27186837 (-) False LOC110501663
XR_002470233.2 mRNA downstream 244805 26939760 ~ 26943228 (-) False LOC110501659
XM_036959006.1 mRNA downstream 251349 26933520 ~ 26936684 (-) False LOC118943583
XM_036959005.1 mRNA downstream 251505 26933520 ~ 26936528 (-) False LOC118943583
XM_021579376.2 mRNA upstream 152527 27340833 ~ 27364591 (-) False LOC110501665
XM_021579378.2 mRNA upstream 152527 27340833 ~ 27364591 (-) False LOC110501665
XM_021579375.2 mRNA upstream 152527 27340833 ~ 27364592 (-) False LOC110501665
XM_036959021.1 mRNA upstream 152527 27340833 ~ 27364592 (-) False LOC110501665
XM_036959022.1 mRNA upstream 152527 27340833 ~ 27364592 (-) False LOC110501665
TU2052534 other downstream 1476414 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2201765 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2330148 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2338281 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 2860906 24326729 ~ 24327127 (-) True G1791405
TU2054267 other upstream 80356 27268662 ~ 27286095 (-) True G1794978
TU2055049 other upstream 553066 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 553066 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 792358 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 821349 28009655 ~ 28012690 (-) True LOC110501691

Expression Profile