RNA id: TU2054244


Basic Information

Item Value
RNA id TU2054244
length 632
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1794955
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27233524 ~ 27287445 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagatgggtggtagacctacatattaaacacagagagaggtcagtggtagacctacatattaaacacagagagaggtcagtggtagacctacatattaaacacagagagagagttcagtggtagacctacatattaaacacacagagagaggtcagtggtagacctacatattaaacacacagagagagaggtcagtggtagacctacatattaaacacaaacacagagagaggtcagtggtagacctacatattaaacacacatagagaggtcagtggtagacctacatattaaacacacagagagagatcagtggtagacctacatattaaacacacatagagagagaggacagtggtagacctacatattagacacacacagagagagatcagtggtagacctacatattaaacacacagagagagaggacagtggtagacctacatattaaacacacacagagagaggtcagtggtagacctacatattaaacacaaacacagagagacgtcagtggtagacctacattttaagcacagagagagaggacagtggtagacctacatattaaacacacacacagagaggtcagtggtagacctacatattaagcagagagagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054241 lncRNA downstream 1945 27230537 ~ 27231579 (-) True G1794953
TU2054208 lncRNA downstream 30424 27201316 ~ 27203100 (-) True G1794920
TU2054207 lncRNA downstream 39787 27193319 ~ 27193737 (-) True G1794919
TU2054226 lncRNA downstream 45218 27188033 ~ 27188306 (-) True G1794938
TU2054225 lncRNA downstream 45900 27187414 ~ 27187624 (-) True G1794937
TU2054310 lncRNA upstream 41409 27328854 ~ 27329502 (-) True G1795020
TU2054388 lncRNA upstream 94423 27381868 ~ 27382072 (-) True G1795090
TU2054392 lncRNA upstream 96910 27384355 ~ 27384922 (-) True LOC110502080
TU2054394 lncRNA upstream 97607 27385052 ~ 27385280 (-) True G1795096
TU2054396 lncRNA upstream 99376 27386821 ~ 27387042 (-) True G1795098
XM_036959017.1 mRNA downstream 46686 27168675 ~ 27186838 (-) True LOC110501663
XM_021579372.2 mRNA downstream 46687 27149329 ~ 27186837 (-) False LOC110501663
XR_002470233.2 mRNA downstream 290296 26939760 ~ 26943228 (-) False LOC110501659
XM_036959006.1 mRNA downstream 296840 26933520 ~ 26936684 (-) False LOC118943583
XM_036959005.1 mRNA downstream 296996 26933520 ~ 26936528 (-) False LOC118943583
XM_021579376.2 mRNA upstream 53388 27340833 ~ 27364591 (-) False LOC110501665
XM_021579378.2 mRNA upstream 53388 27340833 ~ 27364591 (-) False LOC110501665
XM_021579375.2 mRNA upstream 53388 27340833 ~ 27364592 (-) False LOC110501665
XM_036959021.1 mRNA upstream 53388 27340833 ~ 27364592 (-) False LOC110501665
XM_036959022.1 mRNA upstream 53388 27340833 ~ 27364592 (-) False LOC110501665
TU2052534 other downstream 1521905 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2247256 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2375639 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2383772 24848591 ~ 24849752 (-) True G1792342
TU2050435 other downstream 2906397 24326729 ~ 24327127 (-) True G1791405
TU2055049 other upstream 453927 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 453927 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 693219 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 722210 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 1046779 28334224 ~ 28334621 (-) True G1796204

Expression Profile