RNA id: TU2054310


Basic Information

Item Value
RNA id TU2054310
length 649
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1795020
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27328854 ~ 27329502 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtcaacagaagtcagaaatggcattataaatattcacttacctttgatgatctggatcggaatgcactcccgggaatcccagttccacaataaatgtttgttatgTTGGaaaaagtccatcatttatgtccaaatacctcctttttgtttgcgtgtttagttcacaaatccaaattcacaaggCGCGAGTACTAGGTCCAGacaaaagtcaaaaagttccattacagttcgtagaaacatgtcaaacgatgtatagaatcaatctttaggatgtttttatcataaatcttcaataatgttccaaccggacaattcctttgtcttcagaaattaAAGGGAACGCAGCTCGCTTTCACGGCTGCGCGCGTgacttagctcatggcattctgccagacctcttagtcaaacagctcttatttgctcccccttcacagtagaagcctgaaacaaggttccaaagacggttgacatctagtggaagccttaggaagtgcaatcggaccaaatgtatactgtatcttggataggcaaagacttgaaaacctacaaacctcagatttcccacttcctggttggattttgtctcatgtttttgcctgccatatgagttctgttatactcacagacataatgcaaacagttttagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054244 lncRNA downstream 41409 27233524 ~ 27287445 (-) True G1794955
TU2054240 lncRNA downstream 94206 27229272 ~ 27234648 (-) True G1794952
TU2054241 lncRNA downstream 97275 27230537 ~ 27231579 (-) True G1794953
TU2054208 lncRNA downstream 125754 27201316 ~ 27203100 (-) True G1794920
TU2054207 lncRNA downstream 135117 27193319 ~ 27193737 (-) True G1794919
TU2054388 lncRNA upstream 52366 27381868 ~ 27382072 (-) True G1795090
TU2054392 lncRNA upstream 54853 27384355 ~ 27384922 (-) True LOC110502080
TU2054394 lncRNA upstream 55550 27385052 ~ 27385280 (-) True G1795096
TU2054396 lncRNA upstream 57319 27386821 ~ 27387042 (-) True G1795098
TU2054461 lncRNA upstream 103681 27433183 ~ 27433525 (-) True G1795162
XM_036959017.1 mRNA downstream 142016 27168675 ~ 27186838 (-) True LOC110501663
XM_021579372.2 mRNA downstream 142017 27149329 ~ 27186837 (-) False LOC110501663
XR_002470233.2 mRNA downstream 385626 26939760 ~ 26943228 (-) False LOC110501659
XM_036959006.1 mRNA downstream 392170 26933520 ~ 26936684 (-) False LOC118943583
XM_036959005.1 mRNA downstream 392326 26933520 ~ 26936528 (-) False LOC118943583
XM_021579376.2 mRNA upstream 11331 27340833 ~ 27364591 (-) False LOC110501665
XM_021579378.2 mRNA upstream 11331 27340833 ~ 27364591 (-) False LOC110501665
XM_021579375.2 mRNA upstream 11331 27340833 ~ 27364592 (-) False LOC110501665
XM_036959021.1 mRNA upstream 11331 27340833 ~ 27364592 (-) False LOC110501665
XM_036959022.1 mRNA upstream 11331 27340833 ~ 27364592 (-) False LOC110501665
TU2054267 other downstream 42759 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 1617235 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2342586 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2470969 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2479102 24848591 ~ 24849752 (-) True G1792342
TU2055049 other upstream 411870 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 411870 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 651162 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 680153 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 1004722 28334224 ~ 28334621 (-) True G1796204

Expression Profile