RNA id: TU2054388


Basic Information

Item Value
RNA id TU2054388
length 205
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1795090
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27381868 ~ 27382072 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggtccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctgtcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtattgtttaaagtttgccacaagccacctgggagacacaccaaacaagtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054310 lncRNA downstream 52366 27328854 ~ 27329502 (-) True G1795020
TU2054244 lncRNA downstream 94423 27233524 ~ 27287445 (-) True G1794955
TU2054240 lncRNA downstream 147220 27229272 ~ 27234648 (-) True G1794952
TU2054241 lncRNA downstream 150289 27230537 ~ 27231579 (-) True G1794953
TU2054208 lncRNA downstream 178768 27201316 ~ 27203100 (-) True G1794920
TU2054392 lncRNA upstream 2283 27384355 ~ 27384922 (-) True LOC110502080
TU2054394 lncRNA upstream 2980 27385052 ~ 27385280 (-) True G1795096
TU2054396 lncRNA upstream 4749 27386821 ~ 27387042 (-) True G1795098
TU2054461 lncRNA upstream 51111 27433183 ~ 27433525 (-) True G1795162
TU2054462 lncRNA upstream 51624 27433696 ~ 27433897 (-) True G1795163
XM_036959020.1 mRNA downstream 17275 27340833 ~ 27364593 (-) True LOC110501665
XM_021579375.2 mRNA downstream 17276 27340833 ~ 27364592 (-) False LOC110501665
XM_036959021.1 mRNA downstream 17276 27340833 ~ 27364592 (-) False LOC110501665
XM_036959022.1 mRNA downstream 17276 27340833 ~ 27364592 (-) False LOC110501665
XM_021579376.2 mRNA downstream 17277 27340833 ~ 27364591 (-) False LOC110501665
XM_021579393.2 mRNA upstream 110402 27492474 ~ 27498622 (-) False LOC110501670
XM_021579392.2 mRNA upstream 110402 27492474 ~ 27498625 (-) True LOC110501670
XM_021579394.2 mRNA upstream 119619 27501691 ~ 27517461 (-) False LOC110501672
XR_005038805.1 mRNA upstream 119619 27501691 ~ 27517462 (-) False LOC110501672
XM_021579395.2 mRNA upstream 119619 27501691 ~ 27517629 (-) False LOC110501672
TU2054267 other downstream 95773 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 1670249 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2395600 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2523983 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2532116 24848591 ~ 24849752 (-) True G1792342
TU2055049 other upstream 359300 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 359300 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 598592 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 627583 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 952152 28334224 ~ 28334621 (-) True G1796204

Expression Profile