RNA id: TU2054396


Basic Information

Item Value
RNA id TU2054396
length 222
lncRNA type intronic
GC content 0.36
exon number 1
gene id G1795098
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27386821 ~ 27387042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACAAACACCTCTGCAGGTGACTtcactttttctttctctccttaaTGTCTTATTTTCTTTCTCTTGATGTTGTCTTGAAGTCTTGTTACTTTTATTACTCTTGTTCAAATCatgtcaaactttatttgtcacatgcaccgaattaaacaagtgtagaccttgccgtgaaatgcttacttacaagcccttaaccaacagtgctgttcaagaagagttaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054394 lncRNA downstream 1541 27385052 ~ 27385280 (-) True G1795096
TU2054392 lncRNA downstream 1899 27384355 ~ 27384922 (-) True LOC110502080
TU2054388 lncRNA downstream 4749 27381868 ~ 27382072 (-) True G1795090
TU2054310 lncRNA downstream 57319 27328854 ~ 27329502 (-) True G1795020
TU2054244 lncRNA downstream 99376 27233524 ~ 27287445 (-) True G1794955
TU2054461 lncRNA upstream 46141 27433183 ~ 27433525 (-) True G1795162
TU2054462 lncRNA upstream 46654 27433696 ~ 27433897 (-) True G1795163
TU2054475 lncRNA upstream 56049 27443091 ~ 27443296 (-) True G1795176
TU2054943 lncRNA upstream 58459 27445501 ~ 27445827 (-) True G1795580
TU2054944 lncRNA upstream 58839 27445881 ~ 27446178 (-) True G1795581
XM_036959020.1 mRNA downstream 22228 27340833 ~ 27364593 (-) True LOC110501665
XM_021579375.2 mRNA downstream 22229 27340833 ~ 27364592 (-) False LOC110501665
XM_036959021.1 mRNA downstream 22229 27340833 ~ 27364592 (-) False LOC110501665
XM_036959022.1 mRNA downstream 22229 27340833 ~ 27364592 (-) False LOC110501665
XM_021579378.2 mRNA downstream 22230 27340833 ~ 27364591 (-) False LOC110501665
XM_021579393.2 mRNA upstream 105432 27492474 ~ 27498622 (-) False LOC110501670
XM_021579392.2 mRNA upstream 105432 27492474 ~ 27498625 (-) True LOC110501670
XM_021579394.2 mRNA upstream 114649 27501691 ~ 27517461 (-) False LOC110501672
XR_005038805.1 mRNA upstream 114649 27501691 ~ 27517462 (-) False LOC110501672
XM_021579395.2 mRNA upstream 114649 27501691 ~ 27517629 (-) False LOC110501672
TU2054267 other downstream 100726 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 1675202 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2400553 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2528936 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2537069 24848591 ~ 24849752 (-) True G1792342
TU2055049 other upstream 354330 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 354330 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 593622 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 622613 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 947182 28334224 ~ 28334621 (-) True G1796204

Expression Profile