RNA id: TU2054965


Basic Information

Item Value
RNA id TU2054965
length 226
lncRNA type intronic
GC content 0.56
exon number 1
gene id G1795600
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27493913 ~ 27494138 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCAATCATCTGTGTGTTTTTCTCTGACAGAGGCAATGATTAGAGCCTGCTGGAAACTGGGGATATCCTGGCAGACAGAGATCCAGTGCCATGACATTAATCCACATGCCTACCCACTaccccctccctttccccctaTCCCAAAATCCTCCCTGACCCAACCGAGGGCAGATCGTGCTTCGggcggaggagggagaggggggcaggAAGGGGGTTGGATTCCAG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054954 lncRNA downstream 29075 27463145 ~ 27464838 (-) True G1795591
TU2054945 lncRNA downstream 44592 27449069 ~ 27449321 (-) True G1795582
TU2054944 lncRNA downstream 47735 27445881 ~ 27446178 (-) True G1795581
TU2054943 lncRNA downstream 48086 27445501 ~ 27445827 (-) True G1795580
TU2054475 lncRNA downstream 50617 27443091 ~ 27443296 (-) True G1795176
TU2054966 lncRNA upstream 19 27494157 ~ 27494432 (-) True G1795601
TU2054957 lncRNA upstream 7553 27501691 ~ 27517101 (-) False LOC110501672
TU2054958 lncRNA upstream 7553 27501691 ~ 27517538 (-) True LOC110501672
TU2054968 lncRNA upstream 25527 27519665 ~ 27519898 (-) True G1795603
TU2055003 lncRNA upstream 79421 27573559 ~ 27576953 (-) True G1795632
LOC110502080 mRNA downstream 56434 27371067 ~ 27437479 (-) False LOC110502080
XM_036959020.1 mRNA downstream 129320 27340833 ~ 27364593 (-) True LOC110501665
XM_021579375.2 mRNA downstream 129321 27340833 ~ 27364592 (-) False LOC110501665
XM_021579394.2 mRNA upstream 7553 27501691 ~ 27517461 (-) False LOC110501672
XR_005038805.1 mRNA upstream 7553 27501691 ~ 27517462 (-) False LOC110501672
XM_021579395.2 mRNA upstream 7553 27501691 ~ 27517629 (-) False LOC110501672
XM_021579399.2 mRNA upstream 45326 27539464 ~ 27544582 (-) True LOC110501675
NM_001124399.1 mRNA upstream 153592 27647730 ~ 27648708 (-) True il17d
TU2054267 other downstream 207818 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 1782294 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2507645 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2636028 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2644161 24848591 ~ 24849752 (-) True G1792342
TU2055049 other upstream 247234 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 247234 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 486526 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 515517 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 840086 28334224 ~ 28334621 (-) True G1796204

Expression Profile