RNA id: TU2055003


Basic Information

Item Value
RNA id TU2055003
length 3223
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G1795632
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27573559 ~ 27576953 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatatatattcaAGAGTAACAAAATTGTACTATACATTAAGGAGGATCAAAGACATGAGAAACTCCCGAGAGTAAAAATACAAAAAGGAACATAGATTTGAAAAAATCCCATCATGAGTCATTACATAAGATCTCAAATCAGTCACAGATTGTCAGTCATCACTTTCAAAACTCAGATACAAGGAAACCACACATCATCCACAGCACACCTAATACAAAAACACTCATACACACGAGAAAACTGACTCGGTGAGCAGTTTCTTTTTAAAGCTATTTTTCACTGAGTAGTCCATCCTGGTGGATTGGCAATCCCACTCGCGCTGACAACGATGATCAAATTAAGTGAATTTGATGCCCAATCCTGAAGACATGAGCCATATTATAAAAAAACATGTCCATTTCAATTCATTTTGTCATGCAAGTGAGCAAAAACATTTATGGCACGTTTAAACAATTGTCATTGTTTAAAATATTTCCCTCATATTATGTCACAAATCCGATCTTTGAGATACATATTGGTGCacttagaatgtttgggaattgaCTTACGGCAGAACTTGCAACATCTTGACCCTTCCGTCAGTATGCAATCACATATGGAATACTGTTATTCAGTTGGACATACAAGACTGCGTCAATGGTTGATTGTCAATAAGCATATGGAGATATTGGAGAAAATAAAGCATTCCCTGCTTTGAGCAGTGCTCCACTGCATAACAACAATTCTGTAACACAAGCATAATATTAATGGTCAAATTAACCTGTGGCCATTAGGATGCATTAAAATGTACCAATAATAGTCTGTCATTTACCATACTTGGGCTTGTAATACAAAGGAGGCTATTTATTCATATATTTGACACTTTATAACCAATCCTGCCCAGCTTTCCTTTTGTCTCTGAAACACATCTTTCTTTATcaccgtctgtctctctccctcttccatccctACTCTCCTACACACAGGGCCAGCCCAGTTGCAGAGAGCAGGAACGCTGCTGTCGTTATTCTGCACAAACACTGATCATCAACATCATCTTGTGGTGGATAGACATGCACCAACATTCATTGAAAAAAGCACTTTCAAACTCAAACACACTGGCAATCAAACCCACACGTTTCTTTTTTACACAAAAAGGAAAGAAGTACGTATACATGAAATAATGATAAAAATgcaaataataatattaatcaCAATAATAAGCAGCATTGGGTCATGTAACTATACGGAAAATATATCaaccaatataatatatatttgtaCATAGCGTGTTTCAGTATTAAAAAATCAAAAGGATAATTGTAAGTGTTTACAAAAGGATgtattgtattttctgtattgcaCATAGTCATACTATCACATGTTTCTGCCATGTCTCCATACGGACCGAGGAGACTGTGTGGACACTTGGATGTGTTAACTCTATAATACTGCGCGTGTGGAAGTGGTGCACTAGCAGGTTGGACTTTGAAATGTCAATGTGGCTAAAAAGCACGGCATCAGTAATGTCACAGTACATGACAGTCTTAGAGcaggtgtactgtatgtgttgtgttgAGACATGGATAGGCGTGACTGCTTACCAAACATGTATGTAATCACCAGATCCATATCCACAACAATGCAATGATTCACACTTGTAGTTCACCTTCCTCAGAACTAGCTCAATAAAACATAGTCATCATAATAATACAGAGAAAGGAATTGATTGACTCAAATAACAATGTCATCCCATGTATCTGGCAGCTGGCACTTCAACCAAAGGAATTTGTGGTTGTTCCTACGAGTATTTCCCCATCACATCCATTCCCCTGGGTCTGACACTAAAAACAGAATCATTTAGGGGTGGTAAGGGAACAACATAGTGGCTCTCTAACCACAAGATGGCGGCATCCCACATCACctatttggagaaaaaaaaatgtgtgtgaagTTGAAGGTAGGAGACACACAGCTAGTTAACCTTGGGGGAATCTCTAGACTGCCATGTCAGAACGTCTACCTTTGGAAAACATCCAAACAACATTGATAGACATGTGTAAGATAACCCTGTGGTTTTAGAGGACTTCAGGTGGTTAGCTGCAGAGGACAACCTCATTGCCCCCTCCTAGATTGTGTAGTTCAACCATCCTGCAAAGTGTGCATGTGTATTTTGGTAGCTTATTTTGTCACAGCTGTATGAGAAGTGTTGCGTTTTGATTCTCCCCGCTAGTTAATTCAGTCCAGTCCAACCTAACGTCCAGCTCAGTCTCCAAAGCACACACTGGTTCTAGTCCCTAAGTCTCAGAAAGGAAGAGACAAGCAACCCGTGAAACAGCAAGTGTTTGTGTTAACTTCATGGGGTAAGGTCAACCTGGAAGAAGTGATCTCTGTAAGACCCAGGGCAGAAGGAATGGGATAGAGCACTATGACCACTAGAAACACGCATGGTCACGGTCCCAGCGTCAAACTCTTATCTGAACACTTTTGTAAACCTCCACAGTGCAGTGGGAGCCTTTTAGAAGAACTACCTGTTCTGATGAGTCTTTTTTCATAACAGTCCTCTGGCATCATTATCCCATGCCTAGCCCTTGTACAGTTAGTTGTTTCTTGGTCCCAGATCAGGGGTTCTTACTGTAGTCTCTGCTCACGCTGTAGATTCCACACAGTAGTGCTTGAATTGTTGAACAGATGTCAGGCCGTCCTGTTCTCAATATCTcactcgctctcagtctcccaaaACCACATATAcagaggcacgcacacacacatgaacatacaTTCACAGTGGTAGATGGGAGGTTGGCAGACAGGGTCCCAGGTGCTGAGTGTTGActtgctggagagagagagcgaaagagagaggggggcatggTTTAGAAAGCCAACAGTCTGGGCTCTTCTACACATACACAGGCTCACAGCCCTCCccctgctcttcctcctGGTGCAGAGGGTCTCCCAGGCCCGGGTGCTGTCTCCGCTATCACTCCACGCCCCGGgacccccttcctcctccactgGGTCGAAGTTGGAAGTGTCCATGGGGTGGGCAATCTTGGGCCGGTAGGGGGCGGGCTGGGTGCGCAGGTTGCTGGAGAAGTCCATCTGGTCGAAGAAGGGATGAGTTTTGATCTCGCCGGCGCCGTTGCTCCCAAGACGTTCCTCTGGGGAGCAGCAGAGACGGCCGATGATGTCGACAGCCTCGGGGCTGAGCTTGATCTGCGGGGGCACCTGCAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054968 lncRNA downstream 53661 27519665 ~ 27519898 (-) True G1795603
TU2054958 lncRNA downstream 56021 27501691 ~ 27517538 (-) True LOC110501672
TU2054957 lncRNA downstream 56458 27501691 ~ 27517101 (-) False LOC110501672
TU2054966 lncRNA downstream 79127 27494157 ~ 27494432 (-) True G1795601
TU2054965 lncRNA downstream 79421 27493913 ~ 27494138 (-) True G1795600
TU2055031 lncRNA upstream 33050 27610003 ~ 27610400 (-) True G1795660
TU2055065 lncRNA upstream 67870 27644823 ~ 27645027 (-) True G1795689
TU2055079 lncRNA upstream 98183 27675136 ~ 27675378 (-) True G1795703
TU2055083 lncRNA upstream 105222 27682175 ~ 27682438 (-) True G1795707
TU2055084 lncRNA upstream 106127 27683080 ~ 27688572 (-) True G1795708
XM_021579399.2 mRNA downstream 28977 27539464 ~ 27544582 (-) True LOC110501675
XM_021579395.2 mRNA downstream 55930 27501691 ~ 27517629 (-) False LOC110501672
XR_005038805.1 mRNA downstream 56097 27501691 ~ 27517462 (-) False LOC110501672
XM_021579394.2 mRNA downstream 56098 27501691 ~ 27517461 (-) False LOC110501672
XM_021579392.2 mRNA downstream 74934 27492474 ~ 27498625 (-) True LOC110501670
NM_001124399.1 mRNA upstream 70777 27647730 ~ 27648708 (-) True il17d
LOC110502081 mRNA upstream 72281 27649234 ~ 27662614 (-) True LOC110502081
XM_036959032.1 mRNA upstream 129978 27706931 ~ 27738671 (-) False LOC110502082
XM_036959029.1 mRNA upstream 129978 27706931 ~ 27739829 (-) False LOC110502082
XM_036959030.1 mRNA upstream 129978 27706931 ~ 27740630 (-) True LOC110502082
TU2054267 other downstream 287464 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 1861940 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2587291 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2715674 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2723807 24848591 ~ 24849752 (-) True G1792342
TU2055049 other upstream 164419 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 164419 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 403711 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 432702 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 757271 28334224 ~ 28334621 (-) True G1796204

Expression Profile