RNA id: TU2055084


Basic Information

Item Value
RNA id TU2055084
length 4946
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G1795708
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27683080 ~ 27688572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacatttattaaacAGTCTCAAGACTGGGGGTCAAAGTGCAGATAGctgataaaaaaatacaaatcaaaCATCCTTCAAATTAATATCTATCAGCTTTCTAACTGCTGAAGTGTGACCATGAGGCTTTCAAAATGTTGCATTTACAGATATCCTTTGGCATTTCCTCTAAACAATCACAATACAAATAGCACCTCAACTGAATATTGAGAGAAAGTTAGCCTACGGTTTGCTTTCCATGACAATGTCCAAATCATGAGCCATCACAAAATGTGTGGGATGCATCTCACTGGTAAGTGTCCCTACGTCTTCCCAGGTAACAGTCAGATTGTCACTACAGTGATACAAGTTATGGTGTTCCAACTTCTACATGTATGTTTGGACGGAGCACATTAAGCCATTTTTGCCAGTAGATCAGTCTGCTTACTCACATTGAAAGAGGTACACTGATTAGTTCAGTGGCTAAAATAAGCAGCAAGCTGAAAGACAACACCCCCAGTTAGGCTCTGTAGCCAGGTTTACCACCAGTCTTGACAACAATAGGCCATGTCTGTCACAGTTGGCATGCTCAAAGGGCCAGTTTCCAGGACCCAGTTTAAGCCTACTCTTGGACCAAAAAACACTTTACAATTAATATTCCTAATTGAGCATGCCATCTAGTCTAGGCACAGGCTTCATCTGGGTCCAGGAAACCTGCCCAGAATGTTCAACTGGATCAGCCATCTTCCCTGAAACATTGTGCTCAATATACAGCATCAGGTACTATTTGACACTGCTGATAGCGACTCTctcaaggcactgcatcttaaaATTGCTTTGGTACTTGAGAAATTCCACTCGTCACTGTTAGAATTCAGGCAGATATGTGTACACGGGTGATCCTCAAATAGAACTTGgagcaaaactgcacatttgtgAGTTTCTGCTTTGGAAAAGTCTCCCACAAAAGCTGAACACAATGTTAACCAATTCTGGTTGCTCTCCACAATAAAACAGCAAACTCCTGCAAACACATTGTAAACCAGAAGGTGGCACTCTAGACCCATTTCTCACTTCTGTTCAACCTACCACTCCCTGAACAGACATACAGCTCAAACATACAAGCACCTTAAATTGATATCAATAACAATAATACATCCAATTCTAGCACGTTCACTTTTAAAACTCAAAAAGTAGTTTAGGGCACTGAGAGAGAAATATCCTCTACATCCTCAGCTGCTACAGGCATCTAGAATCCAAGTATGGTCTCATCtcatggtaacaacacactgaTAGATTTCTACTCCCTAGTTATGTGTAGTCTCTAATGAAAAAGAACAGGCACTGGGCTGTCCTCACACAGTCTTGTTGCTGGAGGAATCCGTAACAGACGACAGCAGCATCTGATTCTTTTTATTCTGTAGTAGAGACTTGTCCGGGGCCACATGATCAGGGTGAGCATAGGTACGGCTCTTGGAAATCCTGGTGGAGCACCTCATCAGGGCCTTGGCGATGAGGTAGGCCAGCTCGGCCACATTGAGCACCATGCAGATGGCAGAGGAGACCACCATGAAGATGGTGAATATGGTCTTCTCCGTAGGTCGTGAAATGAAGCAGTCCACCTTGTTGGGGCAGGGCCATTGCTCACACTTCACCAGACGAGGCATCTTGAAGCCGTCGTAGACAAAGTAGAGTGCGTACATAAAGCCAGCCTCAAAGATGAGGCGGAAGAACAGGCTGCAGGTGTACGTCCACCACAGAGGCCCAGTGATGGACAGACGCCGCCTCTTTAGAGTCTCCAGGTCCACCTGCCTGGTCTTGTCATCCCCACCGCTTCGTGAGGCCGCGATGATGTGCCGCTTGTCCCCACTCTTCCTGTAAGCCACATGCATAGCCACCAGCAGGGCCGGTGTGGACACAAAGATCAGCTGTAGGCACCAGAGGCGGATGTGTGACACTGGGAAGAAGTGGTCGTAGCAGACGTTCTTGCAGCCGGGCTGCTGGGTGTTGCAGGTGAAGTCAGCCTGCTCGTCTCCCCACACGCTCTCTGCAGCCAGTACCAGGATGGTGATAcgaaagatgaagaggacagacagCCAGATCTTCCCCAGGCTGGTGGAGTGTTTGTTCACCCCGCCCAGCTGGGTGTACAGAGCAACCCAACTCATCTCTAAGGCAACTTTGTCTGAGACCACCTGGAATATCAGCAAACTTCCATCAACTTCAATTTTCGGTTCTCTTTAACGCCGTCTTGTCAAGGAACTCCAAACGTAGAAGAGTAAAGTGTGATTTGTTTGGAAACAAGTCCAACTGAGAAAGCTGCGTGTGTGAGCTCTGGAGCGATGCACCTGAGTTTTTATAATCTTCTCTTCTTGAGGATCCACCCGCTAGGGGCGAGACCAAGGATAAGAGCACTCATCAACTCCACTCGCTAATCGGAATACCGGGACATGTTCAGGACAGAGTAGGCCTATGTATTTTTATGACTACCAGAATCGACTATTTGGTTTcgaagtattgaaaccaaaccattaTGATTTCAATTAAAAGTATTTTAATAAACAACCGGAAAAGGTTGTCATCATTTGAAATGggttacatgtcatattaaacagcatataaacactaacTAGGTCAGGAGCCAAACAAGTAGCCTGAGAAGGAACGAAAATgatttatttaggctatattatttcaaggctatagtcTACAAAGAAATACAATACATCGTAAAGCATTTGCGAGTGCGACACACTAGGCTGTCGGACATTAAGCCTTAGCATTTAAATAACATTTcgttgtattaaatcattatagtctataaaTTGCACATCTAGGCTGTGACTTACTTATAATTAAAATCAAATGAAACGAAAAATGCCTTATTAGGCTCCATCTACAGTCCCtttgaattcatttttagaaacatGAGCTTGGCCTGAGTCACTGCTTTCAGGCTCAGGTGCCTGGAGAGCATGCCAGCAGCGGGAGAATATGTGCTCAGTGCTTGCAGAGCCACTGGGAACGCTAAACACCCTTGGGacactcttgccaggctgggcagggatgagtatgtgttttttttttctgtagGTAGGCCTAAAGTATTTTTAGGTAAAATAACCCTATCAAAACGGAAAGCTCCTTGCAAGAGGTAACGTTAATATGCCAGGCATATTGAGCCAAAATTTATTGATggcctattgtatagataatagaacaAAAATTAACGAAACTTAATCTGATTTTTAGTTTATAAATAGTTTCCTACAATGACACACCTAGCTAGCTACCCATCTCGTTTCATTCTGTTAGCATTTGCACGTAATAAGTACACGATAACGGCTTTCGGGATAACtttcttttcagattccacaacgATTCTTCAGTTCACCGCACTCccttttttttaaaacctttaactaggcaagtcagttaagaacacattcttacaatgacggcctaccagaaggcaaaaggcctcctgcagggacgggcgctgggattaaaaatacaaatataaaacaaaacacacatcacgacaagagagattTAAGACAACACATCACTTACTCATCTTTGTAAATCACCTTGATTtttttatcagtttctttatgaaaatattttgcATACTAAATGATAGTAGCCAAAGCAAAGagctatagcagcacacaagtcgaatacaaatgcatgctgggccggCGATGCCCTGAGCTCGTCAAGTGAGCGCTACTGGAGAGAAACTGGAGCGGGCGAGAAGGACCATGCTCCCGCCTTTGGGAAACTCGCTCCACTTTTCGCTCTGTATGATTAAACATTCTGAACGTTTCATTTCACTGAATACACCCTGTGATCACATTAACTTCAAATGTACTGTTGTCAGATCGGGACACTTGAATTCGGTGTTAATTACTGGTCAAGCATACTGTATAAAGTACATAGTCATCATGAGTCACAAGATCACCAGAACAAATGTAGAGGGAAGATATTTTTTTTGATGTTCAACCCATTTAACAGATCCCAATCATAGTTGTCCAAAATGTGATGTAACACAATATGAAAAACCCTATGATGTATTTTCAATCAATTCATATGTTTGTTGTTTATCTTTAGTTCTTGATAAGGACAATTCAAATCTATTCCAATCCTAGAGAAATTCaacatttgaataaaaaaaattaaaaaatcattAAACAAGTTTATCACATTAACAATTCATATTCACAATTCAAGAAACCATTGTGGTATGACCAAACCATTACTTCCTTTGTCTGATCATCAACTTGTTGATTGCATAAAACATGGATATATTTCTGAGAAGGCATGGCAATCAATCCCCAGATtggtttattgtgtgtgtgggcTCCTACAGCAACATCCCAGATTAGTTGAGCGATTGTGTGTGAGGACTCAGGGCTACAGTATTCATTACCATCCCCAGTGTAGGCACCATTGAGAGATCAGATCATTCTCATCACCATGCTCCTCAGGCTGAGTGAGGGTCAGTGAAGGCCTGAGTAATGGACAGAAGAGTCCCAGACACAAGTCCATCTTGTACATCAGTGGTGTTGATAGTCCAGTGGTCACTTCTTGAGCTTGGCCAGGCCCATGAGGAGctgatccctcctctctctcctagcaGACAGGTGCTGCGGGTCAGCTCACACATCTCCTGTAGGGATAcatcagaggagggagggagaagatgaGATGAGTAGAGAGTAGTTTTAGCTGCTGGGATTTCTGTCTGCTGTTGGCCTGGTAAAATATTTCCTTGGTTGGATACACTTGGATGCATTAAATTGGTCCAATTTGAAATATTTTCTGCTTGTGAAATATTTTCTGCCTATGGTCAGGGTGTTCTCTCACGACAGCCTCCATCTGTGGATAATAATGTTTGAACAGCCTGATGGCATGTGGTTGAGTAATGTCTAATTAACAGAGTAAAGTTCTAGGAGGAGGAAATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055083 lncRNA downstream 642 27682175 ~ 27682438 (-) True G1795707
TU2055079 lncRNA downstream 7702 27675136 ~ 27675378 (-) True G1795703
TU2055065 lncRNA downstream 38053 27644823 ~ 27645027 (-) True G1795689
TU2055031 lncRNA downstream 72680 27610003 ~ 27610400 (-) True G1795660
TU2055003 lncRNA downstream 106127 27573559 ~ 27576953 (-) True G1795632
TU2055105 lncRNA upstream 145850 27834422 ~ 27838560 (-) True acbp
TU2055147 lncRNA upstream 176071 27864643 ~ 27865088 (-) True G1795771
TU2055156 lncRNA upstream 242467 27931039 ~ 27935284 (-) True G1795777
TU2055254 lncRNA upstream 335166 28023738 ~ 28023937 (-) True G1795871
TU2055270 lncRNA upstream 355679 28044251 ~ 28044507 (-) True G1795885
LOC110502081 mRNA downstream 20466 27649234 ~ 27662614 (-) True LOC110502081
NM_001124399.1 mRNA downstream 34372 27647730 ~ 27648708 (-) True il17d
XM_021579399.2 mRNA downstream 138498 27539464 ~ 27544582 (-) True LOC110501675
XM_021579395.2 mRNA downstream 165451 27501691 ~ 27517629 (-) False LOC110501672
XR_005038805.1 mRNA downstream 165618 27501691 ~ 27517462 (-) False LOC110501672
XM_036959032.1 mRNA upstream 18359 27706931 ~ 27738671 (-) False LOC110502082
XM_036959029.1 mRNA upstream 18359 27706931 ~ 27739829 (-) False LOC110502082
XM_036959030.1 mRNA upstream 18359 27706931 ~ 27740630 (-) True LOC110502082
XM_021579416.2 mRNA upstream 52803 27741375 ~ 27744078 (-) False LOC110501685
XM_021579417.2 mRNA upstream 52803 27741375 ~ 27770698 (-) False LOC110501685
TU2054267 other downstream 396985 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 1971461 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2696812 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2825195 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2833328 24848591 ~ 24849752 (-) True G1792342
TU2055049 other upstream 52800 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 52800 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 292092 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 321083 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 645652 28334224 ~ 28334621 (-) True G1796204

Expression Profile