RNA id: TU2055147


Basic Information

Item Value
RNA id TU2055147
length 446
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1795771
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27864643 ~ 27865088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctcttgacacaatgatggaaataatcatggcctctaaaccttcaagctgcatactggaccctattccaactaaactactgaaagagctgcttcctgtgcttggccctcctatattgaacataataaacggctctctatccaccggatgtgtaccaaactcactaaaagtggcagtaaatAAGACCTCTCTTgtaaaagccaaaccttgacccagaaaatataaaaaactatcggcctatattgaatcttccattcctctcaaaaattttagaaaaggctgttgcgcagcaactcactgccttcctgaagacaaacaatgtatacgaattgcttcagtctggttttagaccccatcatagcactgagactgcacttgtgaaggtggtaaattaccttttaatggcgtcagcccgaggctctgcatctgtccttatgcttctagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055105 lncRNA downstream 26083 27834422 ~ 27838560 (-) True acbp
TU2055084 lncRNA downstream 176071 27683080 ~ 27688572 (-) True G1795708
TU2055083 lncRNA downstream 182205 27682175 ~ 27682438 (-) True G1795707
TU2055079 lncRNA downstream 189265 27675136 ~ 27675378 (-) True G1795703
TU2055065 lncRNA downstream 219616 27644823 ~ 27645027 (-) True G1795689
TU2055156 lncRNA upstream 65951 27931039 ~ 27935284 (-) True G1795777
TU2055254 lncRNA upstream 158650 28023738 ~ 28023937 (-) True G1795871
TU2055270 lncRNA upstream 179163 28044251 ~ 28044507 (-) True G1795885
TU2055283 lncRNA upstream 207787 28072875 ~ 28075589 (-) False G1795896
TU2055282 lncRNA upstream 208881 28073969 ~ 28075589 (-) True G1795896
NM_001160694.2 mRNA downstream 26070 27834507 ~ 27838573 (-) False acbp
XR_002470238.2 mRNA downstream 47520 27778697 ~ 27817123 (-) False LOC110501686
XM_036959036.1 mRNA upstream 38494 27903582 ~ 27912917 (-) False LOC110501689
XM_036959035.1 mRNA upstream 38494 27903582 ~ 27912919 (-) True LOC110501689
XM_036959037.1 mRNA upstream 144333 28009421 ~ 28018783 (-) False LOC110501691
XM_021579427.2 mRNA upstream 144333 28009421 ~ 28019116 (-) False LOC110501691
LOC110502083 mRNA upstream 193805 28058893 ~ 28062683 (-) True LOC110502083
TU2055049 other downstream 121044 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other downstream 121044 27741372 ~ 27743599 (-) True LOC110501685
TU2054267 other downstream 578548 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 2153024 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2878375 24985959 ~ 24986268 (-) True G1792433
TU2055231 other upstream 115576 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 144567 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 469136 28334224 ~ 28334621 (-) True G1796204
TU2055669 other upstream 569827 28434915 ~ 28438771 (-) False G1796239
TU2055842 other upstream 761050 28626138 ~ 28626891 (-) True G1796401

Expression Profile