RNA id: TU2055282


Basic Information

Item Value
RNA id TU2055282
length 1461
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G1795896
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28072875 ~ 28075589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTTCGTAGATATAATGTAAAAGGTGTATCTATGCAGGACTCCCTTGAAAAAAAATAGATTTTGGTCTCAatgactacattcctaaataaaggCTACAAATAATTAGAACAAATAGATCAGAGGTTACTGAGGTCAATTACAGTATAATGATTTATTAGCTGGGGGGGAAAATGTACCAAACTAGAGAACAGTTAAATAGTCCTTTTCTGACAATGAGTAAACCTAGAAGTAGGCAACTTATGAAGCATTACATGATAATTCATGTACTGTACCATTTTATAAATCATATTTAAAATGTCTCCATAGTTAGGATCCAGACCTGCGGACCCTCGGTTGAAGACCCCTGCTGACGATCACACCAGGTCCCCCATCATCTACAGAGGAGCTGCAGGTCATTGGAATCCCATGTTAATATTGGAGACAGCAGGTTCTCTCCCACCCTGAGAGCCTCCTGGCCCCTCACCTTCAAGACCATGAACTTGATCTTCCATTTGTTCTGGTCCAGTGGGGAGCGTATGAGGCCAAACGCCTGCTCATAAATGCCGacacattctctgtctctgtggatggtCCCTGCCACAGCCACCAGCACCAGGCCGTGGGGGGAGGGCAGGGCCTTCAGGCCACCAGGATCCAGGTTGGGGCTCAATAGCAGCCTCTCGTCCCTCGCCAGGGCCAGGAGACGCAGGCTGGTCATTGCTGCTCCTTCGTACTCTTCTGTATACTGCTCTCCGGCGCTGGAGAGAAGACGTAGCCTCACATCCTCCCAGAAGTGTTGTGGTCCCCACTCCTGAGGAGGCTGACCCAAGGAGGGGTTCAGACTGTTGAGAAGCTGGAAGAACCACTGACAAAACTGTCTGGCCAAGGCCAGGTGGTCAAAGCCAGCACTGTATGTCGCCTCAGAGAAAACAGAGACACTCTCACTTGTTCTCAGACCAATTGGTCTCAAACTAGTCTCAATTTGTCTCACAATAGTCACAGCTGGTCCTGGATTGGTCTCAGCTGCTGGGCTTTGAAGGTCCAACATCTGGGATGTGTAGTGCGGCTTAGAGTAGACAGGTTGAGGGGGGACATGTGCTGTTGGAAACCTCATTCCTTTCTGAGAATCTGCTGCTCTTgttaaagcactgaaggagacaTCTTCATACGCTTGTGGACACACCTGAAGATAACAGAGACAATGGAAAGAGGTGCATTTACCTCACCTCTTAGTTCCCTAAGTGTCCAAGTGTATCTGCTCCAAAAATACCTTCTCAATAGTCCAGACGTCAAGGGCCTTCTTCACTAGCTGGTCTTTGTTGCTGTTTTTGGGTATCACAACCCCCTCGTCCTCCGTCAGGTATTTGAGTATGAAGTCACGTTGAACTTTCCTGCGTTTCAGGAATGCCTCTGCATTCTCTGTGTTTGAAAGGATGGCATCAATTGATGCTGTAACATAAGAATATGACCCAAAGGACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055270 lncRNA downstream 29462 28044251 ~ 28044507 (-) True G1795885
TU2055254 lncRNA downstream 50032 28023738 ~ 28023937 (-) True G1795871
TU2055156 lncRNA downstream 138685 27931039 ~ 27935284 (-) True G1795777
TU2055147 lncRNA downstream 208881 27864643 ~ 27865088 (-) True G1795771
TU2055105 lncRNA downstream 235409 27834422 ~ 27838560 (-) True acbp
TU2055301 lncRNA upstream 19840 28095429 ~ 28095647 (-) True G1795914
TU2055307 lncRNA upstream 30138 28105727 ~ 28105945 (-) True G1795920
TU2055310 lncRNA upstream 33915 28109504 ~ 28109880 (-) True G1795923
TU2055316 lncRNA upstream 44939 28120528 ~ 28121557 (-) True G1795929
TU2055322 lncRNA upstream 48452 28124041 ~ 28124253 (-) True G1795931
LOC110502083 mRNA downstream 11286 28058893 ~ 28062683 (-) True LOC110502083
XM_021579427.2 mRNA downstream 54853 28009421 ~ 28019116 (-) False LOC110501691
XM_036959037.1 mRNA downstream 55186 28009421 ~ 28018783 (-) False LOC110501691
XM_036959035.1 mRNA downstream 161050 27903582 ~ 27912919 (-) True LOC110501689
XM_036959036.1 mRNA downstream 161052 27903582 ~ 27912917 (-) False LOC110501689
XM_036959043.1 mRNA upstream 463116 28538705 ~ 28542955 (-) False LOC110501696
XM_036959044.1 mRNA upstream 463116 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA upstream 463116 28538705 ~ 28548565 (-) True LOC110501696
trnan-guu-200 mRNA upstream 644470 28720059 ~ 28720132 (-) False trnan-guu-200
XR_005038812.1 mRNA upstream 743741 28819330 ~ 28826708 (-) False LOC110501699
TU2055220 other downstream 61279 28009655 ~ 28012690 (-) True LOC110501691
TU2055231 other downstream 92590 27980664 ~ 27981379 (-) True G1795850
TU2055049 other downstream 330370 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other downstream 330370 27741372 ~ 27743599 (-) True LOC110501685
TU2054267 other downstream 787874 27268662 ~ 27286095 (-) True G1794978
TU2055631 other upstream 258635 28334224 ~ 28334621 (-) True G1796204
TU2055669 other upstream 359326 28434915 ~ 28438771 (-) False G1796239
TU2055842 other upstream 550549 28626138 ~ 28626891 (-) True G1796401
TU2056199 other upstream 750698 28826287 ~ 28826645 (-) True LOC110501699
TU2056693 other upstream 1136075 29211664 ~ 29243649 (-) False G1797146

Expression Profile