RNA id: TU2054913



Basic Information


Item Value
RNA id TU2054913
length 552
RNA type TUCP
GC content 0.51
exon number 1
gene id G1795550
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28091565 ~ 28092116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtttgccaaaaggcacctaaagactctcagaccgtgagaaacaagagtctctggtctgatgaaaccaagaactctttggcctgaaagccaagcatcacgtctggaggaaacctggcaccatccccacggtgaagcatggtggtgaccacatcatgttgtggggatgtttttcagcggcagggactgggagactagtcaggattgagtcaaagatgaatggagcacagtacagacagatccttgatgaaaacctgccccagagcgctcaggacctcagactggggcgaaggttcaccttccaacaggacaacgaccctaagcactcagccaagacaacgcaggagtggcttcgggacaagtctctgaatgtccttgagtggcccagccagagcccggacttgaacccgatctaccATCTctagagagacttgaaaatagctgtgcagcaatgctccccatccaacttaacagagcttgagaggatctgcagagaatcatgggagaaactccccaaatacaggtgtgccaagcttgtagcgtcatatccaagaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2054912 lncRNA upstream 272 28091022 ~ 28091293 (+) True G1795549
TU2054909 lncRNA upstream 3164 28088179 ~ 28088401 (+) True G1795546
TU2054907 lncRNA upstream 3979 28087382 ~ 28087586 (+) True G1795544
TU2054882 lncRNA upstream 47890 28043349 ~ 28043675 (+) True G1795519
TU2054846 lncRNA upstream 103094 27987418 ~ 27988471 (+) True G1795484
TU2055341 lncRNA downstream 56108 28148224 ~ 28156995 (+) True G1795949
TU2055371 lncRNA downstream 96113 28188229 ~ 28188523 (+) True G1795967
TU2055377 lncRNA downstream 100702 28192818 ~ 28193050 (+) True G1795973
TU2055385 lncRNA downstream 113628 28205744 ~ 28205984 (+) True G1795981
TU2055402 lncRNA downstream 136039 28228155 ~ 28228404 (+) True G1795998
XM_021579432.2 mRNA upstream 14994 28072420 ~ 28076571 (+) False LOC110501694
XM_021579431.2 mRNA upstream 14994 28072421 ~ 28076571 (+) True LOC110501694
XM_021579430.2 mRNA upstream 39546 28036917 ~ 28052019 (+) False LOC110501693
XM_021579428.2 mRNA upstream 54801 28028462 ~ 28036764 (+) False ccdc93
XM_036959039.1 mRNA upstream 54801 28028462 ~ 28036764 (+) False ccdc93
XM_036959042.1 mRNA downstream 144104 28236220 ~ 28396350 (+) False LOC110502084
XM_036959041.1 mRNA downstream 144105 28236221 ~ 28396350 (+) False LOC110502084
trnaa-ugc-174 mRNA downstream 198109 28290225 ~ 28290297 (+) True trnaa-ugc-174
XM_021579434.2 mRNA downstream 609751 28701867 ~ 28702664 (+) True LOC110501697
XM_036959048.1 mRNA downstream 663674 28755790 ~ 28958982 (+) False epha6
TU2054839 other upstream 53487 28036928 ~ 28038078 (+) True LOC110501693
TU2054765 other upstream 178690 27903582 ~ 27912875 (+) True G1795411
TU2052918 other upstream 1775322 26315826 ~ 26316243 (+) True G1793717
TU2052189 other upstream 2359811 25731326 ~ 25731754 (+) True G1793045
TU2051751 other upstream 2795008 25294546 ~ 25296557 (+) True G1792649
TU2056148 other downstream 885774 28977890 ~ 28984226 (+) False LOC110502085
TU2055989 other downstream 916508 29008624 ~ 29010273 (+) False LOC110501700
TU2055990 other downstream 916508 29008624 ~ 29010273 (+) False LOC110501700
TU2055991 other downstream 916508 29008624 ~ 29010273 (+) True LOC110501700
TU2057150 other downstream 1652076 29744192 ~ 29744854 (+) True G1797582

Expression Profile