RNA id: TCONS_00051579


Basic Information

Item Value
RNA id TCONS_00051579
length 910
RNA type mRNA
GC content 0.45
exon number 15
gene id XLOC_026472
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32157140 ~ 32170878 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCTACCATCAGCGGAAGcttaatcatGTCTGATGTAGAAGAGGAATATGAGGAACAAGCAGAGGctgaagaagaggaggaggagactACAGAGGAAGCTGGAACAGAACAGCAGGATTATACAGAATATCAGgAGGAGGCTCAGGAAGAAGAGGAGGAAAGACCGAGGCCCAAGCCCATGGTTCCACAACTTGCCCCTCCAAAGATTCCAGAGGGTGAGAGGGTAGATTTTGATGATATTCATCGTAAAAGAATGGAGAAGGACCTTCTGGAGTTACAAACTTTGATTGAGGCCCACTTTGAGCAGAGGAAAAAGGAGGAGGAAGAACTGATTGGTCTAAAGGATAGAATTGAGCGGCGGCGGTTTGAACGAGCAGAGCAGCAGCGTGTTAGagcagagaaagaaagagacagacagacaagaatTGCGGAGGAGCGCCAGAGGAAAGAGGATGAGGAGGCTAAGAAGAGGGCAGATGATGAGGCCAAGAAGAAGAAGGTTTTATCCAATATGGGGGCAAATTTTGGTGGCTTCTTAGCCAAAgCAGAGCAGAAAAGAGGGAAACGTTTGACTGGTCGAGAGATCAAGAGAAAGACTCTTTCAGAGAGGCGTGCTCCCCTTGGCATCGAAAATATGCGTGAGGATGCGTTGAGGCAGCGAGCTCAGGAAATGTGGAACTGGATTTATGAGCTGGAGTCTGAGAAATTTGACCTCTTGGATCAAATGAAGAAACAGAAGTATGAGATTGTTGTTTTGCTGAACAGGATTTCTCACGCTCAAAAGTTCAAAAAAGGTCATGGTAAAGGAAAAGTCGGAGGCCGCTGGAAATAAGAAACTGGAAAAATAAGGAAAGAAAACATGAATGCATTTACTTAGTCTCTCAGAGATGTGAAATGGTCAGAAATGCA

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0045214 sarcomere organization biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005523 tropomyosin binding molecular_function
GO:0031014 troponin T binding molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-080723-27 Predicted to enable tropomyosin binding activity and troponin T binding activity. Predicted to be involved in sarcomere organization and slow-twitch skeletal muscle fiber contraction. Predicted to act upstream of or within regulation of muscle contraction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of troponin complex. Is expressed in muscle and slow muscle cell. Human ortholog(s) of this gene implicated in nemaline myopathy 5. Orthologous to human TNNT1 (troponin T1, slow skeletal type).

Ensembl:

ensembl_id ENSDART00000055307

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053055 lncRNA downstream 101882 31876848 ~ 32055378 (-) True XLOC_026466
TCONS_00053056 lncRNA downstream 199894 31935697 ~ 31957366 (-) False XLOC_026469
TCONS_00053058 lncRNA downstream 199898 31951309 ~ 31957362 (-) True XLOC_026469
TCONS_00053057 lncRNA downstream 204747 31951309 ~ 31952513 (-) False XLOC_026469
TCONS_00051575 lncRNA downstream 232674 31922493 ~ 31924586 (-) True XLOC_026468
TCONS_00051581 lncRNA upstream 1684 32172534 ~ 32180804 (-) False XLOC_026473
TCONS_00051583 lncRNA upstream 5496 32176346 ~ 32180815 (-) False XLOC_026473
TCONS_00053059 lncRNA upstream 15049 32185899 ~ 32221962 (-) False XLOC_026474
TCONS_00051586 lncRNA upstream 23902 32194752 ~ 32196043 (-) False XLOC_026474
TCONS_00051588 lncRNA upstream 25342 32196192 ~ 32222085 (-) False XLOC_026474
TCONS_00051577 mRNA downstream 77344 32074806 ~ 32079916 (-) True XLOC_026471
TCONS_00051576 mRNA downstream 85792 32066983 ~ 32071468 (-) True XLOC_026470
TCONS_00051574 mRNA downstream 232617 31919042 ~ 31924643 (-) False XLOC_026468
TCONS_00051572 mRNA downstream 264252 31879442 ~ 31893008 (-) False XLOC_026467
TCONS_00051571 mRNA downstream 278059 31875772 ~ 31879201 (-) False XLOC_026466
TCONS_00051582 mRNA upstream 1879 32172729 ~ 32180833 (-) False XLOC_026473
TCONS_00051584 mRNA upstream 5996 32176846 ~ 32180796 (-) True XLOC_026473
TCONS_00051589 mRNA upstream 58051 32228901 ~ 32290096 (-) False XLOC_026475
TCONS_00051590 mRNA upstream 69589 32240439 ~ 32275975 (-) False XLOC_026475
TCONS_00051592 mRNA upstream 123895 32294745 ~ 32320537 (-) False XLOC_026476
TCONS_00051529 other downstream 1356602 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 1669166 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 2287136 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 2288528 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 2289720 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051585 other upstream 15284 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 802124 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 1253342 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 1777819 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 1852315 34023165 ~ 34023613 (-) True XLOC_026529

Expression Profile

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