RNA id: TCONS_00051581


Basic Information

Item Value
RNA id TCONS_00051581
length 2088
lncRNA type retained_intron
GC content 0.40
exon number 10
gene id XLOC_026473
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32172534 ~ 32180833 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttcattttactgCATGTCTGAGGCACTCATCATGGACACGGACGCGTCTCTCCTCCTCGGTGTTGAACACGAGCAGAAACAACAAGAAGAGCTTTACCAACAACTTCTGCTTCAGACCATGGGCAAATTGCAGAGCGACAGTCCCCCTTCCAAAGTCATCCGTCCACAGCCtgGTCTGTGCGTGAAGACCTCCTCAGTGTCAGACAAAAAGAAGGTCTTTCTAAACATCTGCCAGTCACAGACGGTACCGCCACCTCCTCACTTGTCCCAGGAAGCACTGGTGGAACTACTGGAGTCAGAGGACCCGACGAGTTACAGAGTGCCCATGAGCCTCGGCGAACCACACACAGAAGTTGACAACAGTAGGCGGGTTTCCTTTACAAACTAGCACAAAACTTTATTTGCCAAACGTCAATAAAACATCATTGCAAAATGGAAGCTTACATGTTAACTCACAGTTTTATGGGACTAAAGCTTCAAATTCTAAAAGTCTTGGCAACAGATATACGGTAAGTAGTATTAGTTAAATTAGAGCCAATGCACAAGCCATTATTTTTAATAGAACTGGGTATGCATCATGTGTGTCAAACAAGCATTAATGGCACGGAAAGCCCTCTGTAGTTCAGAGCAGCCatgaatttgtttttttctgggaaattctattgtaatatttttgtgttttaatgaaaaaatacttaatgcgaacataaaacattttataaatgcgCCTGTTTACAAAAGTGACACATTTccatttcattttgtattttcagTTTacgccaggggtgtccaaactcggtcctggaggatcacctgggccggtgtcctgcatattttagttccaacctcaaataaacacacctgaaccaggcaatcaagctctttctaggtatactagaaacttccaaggAGGTGTCTTGAAGGAAgctggagctaaaatttgcaggacactaTGCAGGCCTGGTTTACACAGTTTAAATGCAGCTAATgagattatattttttaattcactctATTTTCCTTTTATCAGTGTCTCCTGTATCCATTCCAAAGTATGTTGCTGGAAGTGTGATAAGCCTGATATAAATAACCAAAACCAGAACTCGTGCTGATGGACTTATGTGACAGTAAAGTAGATTAGCaatcaaaatatttctttttgcCAGGCTCACAAGGCTGTACTGTGTATGATGTGGTGATCAATGATGAATTCTTTCAGAAATGTGAGAAAGATACCCTCTTCCAGCAGTTTCTTATTGCGGTTTCGTTGGAAGGCTTGGAAAACAAATACAGCCTGGAGTTAAGCAGAGatATAAAAATTTTGAAGAACAGGAAGTTCATGGGATCCATAGCAGAACAAAACATTCGTACCAAGAGCAAGCCAATTATCCAGGAAATTGACTCAAAGGAATCTCTCACACTGCCTTCAGCGGCTAAATGTCCAGAGTTCACTTTACTGGTGGAGCCACCAAGTGGAAAAGCAGAGCACCTGATCGCTGAGATCCTTCTTCCTGGAGTGTCATCTGCTCGATCTGTTGTTCTGGATTTGGGAGAAGACAGACTAGTGCTGATTGCCCGACCATCTCTTTTCCACTTGGATATTTTCTTTCCCGTGCTTATTGACCAAGAAAACAGTGTTGCCcaatacaacacaaacacacagacgcTTACGGTGACCATGCCAGTCGTGTCTTTGTGAAAACTACCGGAAGTCTATGATTTCACAAAAAACTGTTATTCTTTTATTCACTTGTTTACAGTGTAatcaacaacaactacagtataaaacatacttttttttacatGTGTGAAATTGGTTTCCGTTTTTGTGCCCTACAGAACACTATTGATGGAATTATTAGACAACATCGCTCATTAAACCATTATGTCAAAGTTTATGTTTGATTAATTTCTAGAAATCCATTCTGTGCTCTGGCCATAGATAACACTGTCTTTGCCAGTTACCACTAGTTGCCACATTGTCCTAGCCAAatgcacgcatacacacatgcaaaaggtttgtaaaataaaaaaaggaatgtgAATAAAACCACATtcggggaaataaaaaaaataatgaaatttaaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006605 protein targeting biological_process
GO:0006364 rRNA processing biological_process
GO:0070286 axonemal dynein complex assembly biological_process
GO:0000492 box C/D snoRNP assembly biological_process
GO:0072594 establishment of protein localization to organelle biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005680 anaphase-promoting complex cellular_component
GO:0097255 R2TP complex cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-147 Acts upstream of or within axonemal dynein complex assembly. Predicted to be located in nucleus. Predicted to be part of R2TP complex and ribonucleoprotein complex. Predicted to be active in cytoplasm. Is expressed in Kupffer's vesicle; floor plate; otic vesicle; and pronephric duct. Orthologous to human PIH1D1 (PIH1 domain containing 1).

Ensembl:

ensembl_id ENSDART00000148143

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053055 lncRNA downstream 117156 31876848 ~ 32055378 (-) True XLOC_026466
TCONS_00053056 lncRNA downstream 215168 31935697 ~ 31957366 (-) False XLOC_026469
TCONS_00053058 lncRNA downstream 215172 31951309 ~ 31957362 (-) True XLOC_026469
TCONS_00053057 lncRNA downstream 220021 31951309 ~ 31952513 (-) False XLOC_026469
TCONS_00051575 lncRNA downstream 247948 31922493 ~ 31924586 (-) True XLOC_026468
TCONS_00053059 lncRNA upstream 5095 32185899 ~ 32221962 (-) False XLOC_026474
TCONS_00051586 lncRNA upstream 13948 32194752 ~ 32196043 (-) False XLOC_026474
TCONS_00051588 lncRNA upstream 15388 32196192 ~ 32222085 (-) False XLOC_026474
TCONS_00051587 lncRNA upstream 15388 32196192 ~ 32222085 (-) True XLOC_026474
TCONS_00051591 lncRNA upstream 98278 32279082 ~ 32290059 (-) True XLOC_026475
TCONS_00051578 mRNA downstream 1656 32157140 ~ 32170878 (-) False XLOC_026472
TCONS_00051579 mRNA downstream 1684 32157260 ~ 32170850 (-) False XLOC_026472
TCONS_00051580 mRNA downstream 2780 32157337 ~ 32169754 (-) True XLOC_026472
TCONS_00051577 mRNA downstream 92618 32074806 ~ 32079916 (-) True XLOC_026471
TCONS_00051576 mRNA downstream 101066 32066983 ~ 32071468 (-) True XLOC_026470
TCONS_00051589 mRNA upstream 48097 32228901 ~ 32290096 (-) False XLOC_026475
TCONS_00051590 mRNA upstream 59635 32240439 ~ 32275975 (-) False XLOC_026475
TCONS_00051592 mRNA upstream 113941 32294745 ~ 32320537 (-) False XLOC_026476
TCONS_00051593 mRNA upstream 117699 32298503 ~ 32299892 (-) False XLOC_026476
TCONS_00051594 mRNA upstream 122777 32303581 ~ 32320543 (-) True XLOC_026476
TCONS_00051529 other downstream 1371876 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 1684440 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 2302410 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 2303802 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 2304994 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051585 other upstream 5330 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 792170 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 1243388 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 1767865 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 1842361 34023165 ~ 34023613 (-) True XLOC_026529

Expression Profile

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