RNA id: TU2055817


Basic Information

Item Value
RNA id TU2055817
length 1119
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1796376
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28606304 ~ 28607422 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attggccataagagactacattttccagaggtccgcccggtgtcctttgtctaaatttgtgcgtaatcttcaggtgcaggcattttctcctgggattcaggagagaaagcatgtttccaagaacgatgtatcaatgaagagatatgtgaaaaacaccttgaggattgattctaaaccagtttgccatgttttcagtcgatattatggagttaatttggaaaaaagtttgcgttttgaggactgaatttatggatttcttttggtagccaaatgtgatgtataaaacggagctatttctaatacacaaggaatctttttggaaaaactgagcatctgctatctaactgagagtatcctcattgaaaacatcagaagttcttcaaaggtaaatgattttatttgaaggcttttatgtttttgttaatgttgcgtgctggatgctaacgctaatgctaacgctaaatgctaacgcgaaatgctaactctagctagctacttttacacaaatgattgttttcctatggttgagaagcatattttgaaaatctgagatgacagtgttgtttacaaaaggctaagcttgagagatggcatatttatttcatttcatttgcgattttcataaatagttaacgttgtgttatgctaatgagcttgctgatagatttacacaatcctggatacaggggttttttcatagctaaacgtgacgcagaaaatggagcgatttgtcctaaacaaataatctttcaggaaaaactgaacatttgctatctgagagtctcctcaatgaaaacatctgaagttcttcaaaggtaaatgatttttttgaatgcttttctgtttttttgtgtaaatgttgccagctgaatgctaatgctaaatgctacgttagccatcaatactgttacacaaattattgttttgcaatggttgagaagcatattttgaaaatctgagatgacagtgttgttaacaaaaggctaagcttgagagctagcatatttatttcatttcatttgcgattttcatgaatagttaacgttgcgttatggtaatgagcttgagtctgtattcacgaacccggatccgggatggggagatcagaaaggttaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055804 lncRNA downstream 8607 28597490 ~ 28597697 (-) True G1796363
TU2055769 lncRNA downstream 21522 28565325 ~ 28584782 (-) True G1796328
TU2055743 lncRNA downstream 54196 28551865 ~ 28552108 (-) True G1796302
TU2055737 lncRNA downstream 68800 28537079 ~ 28537504 (-) True G1796297
TU2055704 lncRNA downstream 94547 28511294 ~ 28511757 (-) True G1796264
TU2055818 lncRNA upstream 471 28607893 ~ 28608240 (-) True G1796377
TU2055825 lncRNA upstream 4323 28611745 ~ 28612089 (-) True G1796384
TU2055859 lncRNA upstream 37649 28645071 ~ 28645297 (-) True G1796418
TU2055872 lncRNA upstream 47794 28655216 ~ 28655542 (-) True G1796431
TU2055876 lncRNA upstream 49836 28657258 ~ 28657479 (-) True G1796435
XM_036959044.1 mRNA downstream 57739 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA downstream 57739 28538705 ~ 28548565 (-) True LOC110501696
XM_036959043.1 mRNA downstream 63349 28538705 ~ 28542955 (-) False LOC110501696
LOC110502083 mRNA downstream 543621 28058893 ~ 28062683 (-) True LOC110502083
XM_021579427.2 mRNA downstream 587188 28009421 ~ 28019116 (-) False LOC110501691
trnan-guu-200 mRNA upstream 112637 28720059 ~ 28720132 (-) False trnan-guu-200
XR_005038812.1 mRNA upstream 211908 28819330 ~ 28826708 (-) False LOC110501699
XR_005038814.1 mRNA upstream 716723 29324145 ~ 29325269 (-) True LOC118943585
XM_021579450.2 mRNA upstream 826130 29433552 ~ 29441063 (-) False LOC110501708
XM_021579449.2 mRNA upstream 826130 29433552 ~ 29441071 (-) False LOC110501708
TU2055669 other downstream 167533 28434915 ~ 28438771 (-) False G1796239
TU2055631 other downstream 271683 28334224 ~ 28334621 (-) True G1796204
TU2055220 other downstream 593614 28009655 ~ 28012690 (-) True LOC110501691
TU2055231 other downstream 624925 27980664 ~ 27981379 (-) True G1795850
TU2055050 other downstream 862705 27741372 ~ 27743599 (-) True LOC110501685
TU2055842 other upstream 18716 28626138 ~ 28626891 (-) True G1796401
TU2056199 other upstream 218865 28826287 ~ 28826645 (-) True LOC110501699
TU2056693 other upstream 604242 29211664 ~ 29243649 (-) False G1797146
TU2056696 other upstream 604242 29211664 ~ 29243649 (-) True G1797146
TU2057122 other upstream 1052045 29659467 ~ 29660947 (-) True G1797556

Expression Profile