RNA id: TU2055922


Basic Information

Item Value
RNA id TU2055922
length 826
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G1796481
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28701932 ~ 28702757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCATTTCAGGGCTTTTGATCACATGTACTATGTATCAAGGTGCATAACAGAATGAATATGATTATATTTGTTCCTCAGAAAGCAAGAAAAAataacttttaaaatgttttatttaaatatttttattcaATGGCTTGTCTCATTTACATCATTGTAAAGAGCAGCATCTAGTACCAGGACTCGTTGATACGCCTCATGCTCTGGAACCTCATGCCACCCATGCCGCCCATGCCACCCATGCTTCCCATACCCATGCTGAAGTGCCTGTACTCTCCAGGCCTCATGAACATCATCCTGCCTCTGAAGTGGGGCATCTCATACATGAGCCAGTGGCCGTCCTGGATGTTGCAGGACATACAGCTGGACATGCGGTAACGATCCATGATGTTGTCACAGTCCTCCATGATCTCGTGGCTCTGACCGCCGAAGCTCTCTCTCTCGTAGATCTTCATCCTGTAAGATCCCCTGTGCATAGGGATCATGCGGCAGGACCTCATACCGTTGGCCATTCTCATCATGTGGTAGTCAGCGTACTCTCCCTTCCTCATGAAGTACTGGTTTCCCATGTAGTTGGGGCGGTCATACAGCATGAAGCAGCCACCCTCAACCTTGCAGGAGTGGCAGCGGCTCAGGAAGGAGTACATGTCAGGGCAGTCGGTGCTGCACTCATGGGAGCGGCCCATGAAGTTCCTGTCCTCGTAGAAGACTATCCTGCTGTTCATGTTGGGCATTTTGGCTTGCTTCATGGGGgtcctgctgttgctgctgctgctgctgctctggaACTGATATCCTACTGGTTTAAAACCTTTCTTTTTATACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055892 lncRNA downstream 35918 28665761 ~ 28666014 (-) True G1796451
TU2055876 lncRNA downstream 44453 28657258 ~ 28657479 (-) True G1796435
TU2055872 lncRNA downstream 46390 28655216 ~ 28655542 (-) True G1796431
TU2055859 lncRNA downstream 56635 28645071 ~ 28645297 (-) True G1796418
TU2055825 lncRNA downstream 89843 28611745 ~ 28612089 (-) True G1796384
TU2055930 lncRNA upstream 3800 28706557 ~ 28706780 (-) True G1796489
TU2055949 lncRNA upstream 17342 28720099 ~ 28720298 (-) True trnan-guu-200
TU2055957 lncRNA upstream 30951 28733708 ~ 28733948 (-) True G1796516
TU2055987 lncRNA upstream 52385 28755142 ~ 28755391 (-) True G1796546
TU2056164 lncRNA upstream 53251 28756008 ~ 28756257 (-) True G1796687
XM_036959044.1 mRNA downstream 153367 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA downstream 153367 28538705 ~ 28548565 (-) True LOC110501696
XM_036959043.1 mRNA downstream 158977 28538705 ~ 28542955 (-) False LOC110501696
LOC110502083 mRNA downstream 639249 28058893 ~ 28062683 (-) True LOC110502083
XM_021579427.2 mRNA downstream 682816 28009421 ~ 28019116 (-) False LOC110501691
trnan-guu-200 mRNA upstream 17302 28720059 ~ 28720132 (-) False trnan-guu-200
XR_005038812.1 mRNA upstream 116573 28819330 ~ 28826708 (-) False LOC110501699
XR_005038814.1 mRNA upstream 621388 29324145 ~ 29325269 (-) True LOC118943585
XM_021579450.2 mRNA upstream 730795 29433552 ~ 29441063 (-) False LOC110501708
XM_021579449.2 mRNA upstream 730795 29433552 ~ 29441071 (-) False LOC110501708
TU2055842 other downstream 75041 28626138 ~ 28626891 (-) True G1796401
TU2055669 other downstream 263161 28434915 ~ 28438771 (-) False G1796239
TU2055631 other downstream 367311 28334224 ~ 28334621 (-) True G1796204
TU2055220 other downstream 689242 28009655 ~ 28012690 (-) True LOC110501691
TU2055231 other downstream 720553 27980664 ~ 27981379 (-) True G1795850
TU2056199 other upstream 123530 28826287 ~ 28826645 (-) True LOC110501699
TU2056693 other upstream 508907 29211664 ~ 29243649 (-) False G1797146
TU2056696 other upstream 508907 29211664 ~ 29243649 (-) True G1797146
TU2057122 other upstream 956710 29659467 ~ 29660947 (-) True G1797556
TU2057451 other upstream 1135520 29838277 ~ 29843180 (-) True LOC110501714

Expression Profile