RNA id: TCONS_00053059


Basic Information

Item Value
RNA id TCONS_00053059
length 1885
lncRNA type inter_gene
GC content 0.35
exon number 16
gene id XLOC_026474
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 32185899 ~ 32222085 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTGGTCAGTTCACCCACGACTTTTCTGGTATCTTGGGGGCATTTTAAATTCCCAGAAACACAAGGGGCTCGATTCTTAAGGCTGGAAAACGAAAGTATGTTGCAGAGCAAGAGAAGGCGTCAGAAAGACAACAACATTGTGACATATGGAGCTGAACTCTAATGGTTAAGAAGACTCCGTAATGATTGGGAAAGTTTGGACACTGATCATTGTATTATCACTCATCAAATTTATTCATCATATCCAAGCTGAATGTATGCAACAAGATATTGAGGAACACCTGATTAACGAGTTGATGGAAGACCATGTGTTTGAGATTAAGGTATTCTCATCTGAGACAAAGGTAAGTACAATGAATCCAAGCTTCTAACAGTCATAAATACTCTTTGTTCATACATGaccaaaaataacaacaaagacAAAAAATTCCGTGTATTGGAAACATTTGAAATCATGCTAAAGTATCTAGACAATAACATCACCAACTTTTGTGccacacacacctgcatggatgctTCCTCAGTAAGATATGTTAATAAAAGGACATTCCGTGATATGTATCTACATTCTTGCAATAGTTCAGTATCAGATCTGAAGTGCCCATCAGATAGCACAACACCTTTCACAACTATCAGCCCTAATGACACTGCTTTTAAAAGAACAACATTTTTAACGACAGTCAGTTCAACGTACACAGTTCACAATGGAAGTATAACATCTTCTACGGCGGTCACCCCAAACTTTACACCCCAAACTGAAAATCAGACAATTGTAGATTCATTGACAACTTCATCCTCACCTAAAGAATCAATCTATGAGAAAGTAATAGCTGAAAATCAGAATCTCCAGACTACCATTAAAACAATTTCTGTGGCCTTTGCTGTCTCTCTACTACTCAATGTCTTTCTACTCCTGTCACATTTGTGGAATCGCAAGaGAAGAGGTTCTCAAGGGacagCTGAAGTAAATGAGTTGAGCCGCTTGCATTCACCATTGGAAAGCACATGTCTCTGTGATGGTCCCCCGTCTCCTTCCTGTtgatcttacaaaaaaaaaaaacctgcatggTATTGTACTTTTTGAACCGGCGGCTGACAAAATCATCCAAGTGCAGCTTATTAAATCAATATGCTCAAGTGTTTGAACACAGCTTCTGTATATGTCCACCTATGAGTGCCCCTCTATAACTGTTATATTCTTTTATCTGTCAAGCACCTCTATTCatgttttttgatgttgtttgCTCTGTGATGATCATGTTAGCTATAAGATATGGATTAAGAAAGGACCCTTCAGCACTCAGGAGTGACTGCACGCTAAAGACAGGTCTTTAAGAAAGGGACGGAAAACTCTTTACAGCTAAAGTACTCTACAATTATTGTTATATGTACATTGTttttaaagcagttaatttttgtattaatgtactttgttttgctatttttatattttcttgtgTTTTTGTACATAGCCTTTATGTGTTTTATTCTGGGTATCTCAGATtgcttattatatttttatattgatgcatttgtgtaaatgtgttgtttatttgcagttttgtttgtataaaatcaaaaatattattatgtgCATCCTAAACCCTATTAAATGGCACAAAAAAGTTCTCATTAAAAATCGAATAGCATTTCATTGCAACTTGTCTTCATTACTCCGGTGGGGTTATGTTATAAAGaatgtattattaattttcatattcatattcatgcTCCACATTCTCCATATGCagcacatttaataataatactaataataataattgtagggaaattttaaagtttttaccCAAGAAATAGCCAGTGCATCAGATGAAGAGCTTCAAAGattcaagtttactgaagatagtttgtagtttcatcagc

Function

GO:

id name namespace
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0030155 regulation of cell adhesion biological_process
GO:0009888 tissue development biological_process
GO:0043062 extracellular structure organization biological_process
GO:0042221 response to chemical biological_process
GO:0071711 basement membrane organization biological_process
GO:0032501 multicellular organismal process biological_process
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0005901 caveola cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0044877 protein-containing complex binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051583 lncRNA downstream 5084 32176346 ~ 32180815 (-) False XLOC_026473
TCONS_00051581 lncRNA downstream 5095 32172534 ~ 32180804 (-) False XLOC_026473
TCONS_00053055 lncRNA downstream 130521 31876848 ~ 32055378 (-) True XLOC_026466
TCONS_00053056 lncRNA downstream 228533 31935697 ~ 31957366 (-) False XLOC_026469
TCONS_00053058 lncRNA downstream 228537 31951309 ~ 31957362 (-) True XLOC_026469
TCONS_00051591 lncRNA upstream 57120 32279082 ~ 32290059 (-) True XLOC_026475
TCONS_00053060 lncRNA upstream 103172 32325134 ~ 32329103 (-) False XLOC_026477
TCONS_00051598 lncRNA upstream 103172 32325134 ~ 32329260 (-) False XLOC_026477
TCONS_00053061 lncRNA upstream 103172 32325134 ~ 32334302 (-) False XLOC_026477
TCONS_00051595 lncRNA upstream 103172 32325134 ~ 32337690 (-) False XLOC_026477
TCONS_00051582 mRNA downstream 5066 32172729 ~ 32180833 (-) False XLOC_026473
TCONS_00051584 mRNA downstream 5103 32176846 ~ 32180796 (-) True XLOC_026473
TCONS_00051578 mRNA downstream 15021 32157140 ~ 32170878 (-) False XLOC_026472
TCONS_00051579 mRNA downstream 15049 32157260 ~ 32170850 (-) False XLOC_026472
TCONS_00051580 mRNA downstream 16145 32157337 ~ 32169754 (-) True XLOC_026472
TCONS_00051589 mRNA upstream 6939 32228901 ~ 32290096 (-) False XLOC_026475
TCONS_00051590 mRNA upstream 18477 32240439 ~ 32275975 (-) False XLOC_026475
TCONS_00051592 mRNA upstream 72783 32294745 ~ 32320537 (-) False XLOC_026476
TCONS_00051593 mRNA upstream 76541 32298503 ~ 32299892 (-) False XLOC_026476
TCONS_00051594 mRNA upstream 81619 32303581 ~ 32320543 (-) True XLOC_026476
TCONS_00051529 other downstream 1385241 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 1697805 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 2315775 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 2317167 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 2318359 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051635 other upstream 751012 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 1202230 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 1726707 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 1801203 34023165 ~ 34023613 (-) True XLOC_026529
TCONS_00051708 other upstream 1813230 34035192 ~ 34035631 (-) True XLOC_026534

Expression Profile

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