RNA id: TU2055930


Basic Information

Item Value
RNA id TU2055930
length 224
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1796489
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28706557 ~ 28706780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATGACGTGCTACCTCGTCCCGGATCTGTTGTTTTGgactctctaccgcacctgctgtctataactcttaatgatcggctatgaaaagccaactgacatttactcctgaggtgctgacctgttgcaccctctacaaccactgtgattattattattattatctgaccctgctggtcatctatgaacgtttgaacatcttggccatgtcctgttataatctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055922 lncRNA downstream 3800 28701932 ~ 28702757 (-) True G1796481
TU2055892 lncRNA downstream 40543 28665761 ~ 28666014 (-) True G1796451
TU2055876 lncRNA downstream 49078 28657258 ~ 28657479 (-) True G1796435
TU2055872 lncRNA downstream 51015 28655216 ~ 28655542 (-) True G1796431
TU2055859 lncRNA downstream 61260 28645071 ~ 28645297 (-) True G1796418
TU2055949 lncRNA upstream 13319 28720099 ~ 28720298 (-) True trnan-guu-200
TU2055957 lncRNA upstream 26928 28733708 ~ 28733948 (-) True G1796516
TU2055987 lncRNA upstream 48362 28755142 ~ 28755391 (-) True G1796546
TU2056164 lncRNA upstream 49228 28756008 ~ 28756257 (-) True G1796687
TU2056179 lncRNA upstream 85612 28792392 ~ 28792604 (-) True G1796695
XM_036959044.1 mRNA downstream 157992 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA downstream 157992 28538705 ~ 28548565 (-) True LOC110501696
XM_036959043.1 mRNA downstream 163602 28538705 ~ 28542955 (-) False LOC110501696
LOC110502083 mRNA downstream 643874 28058893 ~ 28062683 (-) True LOC110502083
XM_021579427.2 mRNA downstream 687441 28009421 ~ 28019116 (-) False LOC110501691
trnan-guu-200 mRNA upstream 13279 28720059 ~ 28720132 (-) False trnan-guu-200
XR_005038812.1 mRNA upstream 112550 28819330 ~ 28826708 (-) False LOC110501699
XR_005038814.1 mRNA upstream 617365 29324145 ~ 29325269 (-) True LOC118943585
XM_021579450.2 mRNA upstream 726772 29433552 ~ 29441063 (-) False LOC110501708
XM_021579449.2 mRNA upstream 726772 29433552 ~ 29441071 (-) False LOC110501708
TU2055842 other downstream 79666 28626138 ~ 28626891 (-) True G1796401
TU2055669 other downstream 267786 28434915 ~ 28438771 (-) False G1796239
TU2055631 other downstream 371936 28334224 ~ 28334621 (-) True G1796204
TU2055220 other downstream 693867 28009655 ~ 28012690 (-) True LOC110501691
TU2055231 other downstream 725178 27980664 ~ 27981379 (-) True G1795850
TU2056199 other upstream 119507 28826287 ~ 28826645 (-) True LOC110501699
TU2056693 other upstream 504884 29211664 ~ 29243649 (-) False G1797146
TU2056696 other upstream 504884 29211664 ~ 29243649 (-) True G1797146
TU2057122 other upstream 952687 29659467 ~ 29660947 (-) True G1797556
TU2057451 other upstream 1131497 29838277 ~ 29843180 (-) True LOC110501714

Expression Profile