RNA id: TU2055987


Basic Information

Item Value
RNA id TU2055987
length 250
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1796546
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28755142 ~ 28755391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatatatattcccccaTTTTAAACGACATTAGCTATGCCTAGGCCTACAACCTTTTCACATTTGCAAAATCAATTTAGAAGGTCGGACCACTCATTTTCACAGTAGGTTAATTTAATGTAGGTTTACCGTAAATGTACTGTAAAAGTGACTTCAAGATGAAGGTGACTTCAAGTTTATAATTCCGATTGTTCATTTGGAAAACATTGACTGTATGTTGCCCCTAGACCTAGGTTCAGTTTAGTGTTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055957 lncRNA downstream 21194 28733708 ~ 28733948 (-) True G1796516
TU2055949 lncRNA downstream 34844 28720099 ~ 28720298 (-) True trnan-guu-200
TU2055930 lncRNA downstream 48362 28706557 ~ 28706780 (-) True G1796489
TU2055922 lncRNA downstream 52385 28701932 ~ 28702757 (-) True G1796481
TU2055892 lncRNA downstream 89128 28665761 ~ 28666014 (-) True G1796451
TU2056164 lncRNA upstream 617 28756008 ~ 28756257 (-) True G1796687
TU2056179 lncRNA upstream 37001 28792392 ~ 28792604 (-) True G1796695
TU2056183 lncRNA upstream 40719 28796110 ~ 28796315 (-) True G1796699
TU2056195 lncRNA upstream 66347 28821738 ~ 28826108 (-) False LOC110501699
TU2056221 lncRNA upstream 104426 28859817 ~ 28860023 (-) True G1796736
trnan-guu-200 mRNA downstream 35010 28720059 ~ 28720132 (-) False trnan-guu-200
XM_036959044.1 mRNA downstream 206577 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA downstream 206577 28538705 ~ 28548565 (-) True LOC110501696
XM_036959043.1 mRNA downstream 212187 28538705 ~ 28542955 (-) False LOC110501696
LOC110502083 mRNA downstream 692459 28058893 ~ 28062683 (-) True LOC110502083
XR_005038812.1 mRNA upstream 63939 28819330 ~ 28826708 (-) False LOC110501699
XR_005038814.1 mRNA upstream 568754 29324145 ~ 29325269 (-) True LOC118943585
XM_021579450.2 mRNA upstream 678161 29433552 ~ 29441063 (-) False LOC110501708
XM_021579449.2 mRNA upstream 678161 29433552 ~ 29441071 (-) False LOC110501708
XM_021579452.2 mRNA upstream 850672 29606063 ~ 29619908 (-) True dnajc15
TU2055842 other downstream 128251 28626138 ~ 28626891 (-) True G1796401
TU2055669 other downstream 316371 28434915 ~ 28438771 (-) False G1796239
TU2055631 other downstream 420521 28334224 ~ 28334621 (-) True G1796204
TU2055220 other downstream 742452 28009655 ~ 28012690 (-) True LOC110501691
TU2055231 other downstream 773763 27980664 ~ 27981379 (-) True G1795850
TU2056199 other upstream 70896 28826287 ~ 28826645 (-) True LOC110501699
TU2056693 other upstream 456273 29211664 ~ 29243649 (-) False G1797146
TU2056696 other upstream 456273 29211664 ~ 29243649 (-) True G1797146
TU2057122 other upstream 904076 29659467 ~ 29660947 (-) True G1797556
TU2057451 other upstream 1082886 29838277 ~ 29843180 (-) True LOC110501714

Expression Profile