RNA id: TU2056164


Basic Information

Item Value
RNA id TU2056164
length 250
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G1796687
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28756008 ~ 28756257 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCATAGCAATGCTCAACGACTAAATACTAGATCATGAAAACTTTGCGTTCCGCGTCGGAGCCTACTGTATTTCACTGTGTTGACAGTGAATTAGACATCTAATCAAATATTTCTCATCAGCTGCATTATCTTATTTCCTAGTTTCATCCAAGTGCATGCGTGATTCCTTCATGGGGGAAATAGAAGACGCCAGGATGTGGTTCGTGACCGAAAGTTCCGAACTTCAAGTGGCGCGGTATCAGTTGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055987 lncRNA downstream 617 28755142 ~ 28755391 (-) True G1796546
TU2055957 lncRNA downstream 22060 28733708 ~ 28733948 (-) True G1796516
TU2055949 lncRNA downstream 35710 28720099 ~ 28720298 (-) True trnan-guu-200
TU2055930 lncRNA downstream 49228 28706557 ~ 28706780 (-) True G1796489
TU2055922 lncRNA downstream 53251 28701932 ~ 28702757 (-) True G1796481
TU2056179 lncRNA upstream 36135 28792392 ~ 28792604 (-) True G1796695
TU2056183 lncRNA upstream 39853 28796110 ~ 28796315 (-) True G1796699
TU2056195 lncRNA upstream 65481 28821738 ~ 28826108 (-) False LOC110501699
TU2056221 lncRNA upstream 103560 28859817 ~ 28860023 (-) True G1796736
TU2056223 lncRNA upstream 107862 28864119 ~ 28864548 (-) True G1796738
trnan-guu-200 mRNA downstream 35876 28720059 ~ 28720132 (-) False trnan-guu-200
XM_036959044.1 mRNA downstream 207443 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA downstream 207443 28538705 ~ 28548565 (-) True LOC110501696
XM_036959043.1 mRNA downstream 213053 28538705 ~ 28542955 (-) False LOC110501696
LOC110502083 mRNA downstream 693325 28058893 ~ 28062683 (-) True LOC110502083
XR_005038812.1 mRNA upstream 63073 28819330 ~ 28826708 (-) False LOC110501699
XR_005038814.1 mRNA upstream 567888 29324145 ~ 29325269 (-) True LOC118943585
XM_021579450.2 mRNA upstream 677295 29433552 ~ 29441063 (-) False LOC110501708
XM_021579449.2 mRNA upstream 677295 29433552 ~ 29441071 (-) False LOC110501708
XM_021579452.2 mRNA upstream 849806 29606063 ~ 29619908 (-) True dnajc15
TU2055842 other downstream 129117 28626138 ~ 28626891 (-) True G1796401
TU2055669 other downstream 317237 28434915 ~ 28438771 (-) False G1796239
TU2055631 other downstream 421387 28334224 ~ 28334621 (-) True G1796204
TU2055220 other downstream 743318 28009655 ~ 28012690 (-) True LOC110501691
TU2055231 other downstream 774629 27980664 ~ 27981379 (-) True G1795850
TU2056199 other upstream 70030 28826287 ~ 28826645 (-) True LOC110501699
TU2056693 other upstream 455407 29211664 ~ 29243649 (-) False G1797146
TU2056696 other upstream 455407 29211664 ~ 29243649 (-) True G1797146
TU2057122 other upstream 903210 29659467 ~ 29660947 (-) True G1797556
TU2057451 other upstream 1082020 29838277 ~ 29843180 (-) True LOC110501714

Expression Profile