RNA id: TU2056246


Basic Information

Item Value
RNA id TU2056246
length 4113
lncRNA type intronic
GC content 0.37
exon number 3
gene id G1796761
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28935316 ~ 28941305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGATTCTACTCAGGAAGGAATATGAGAGAGATCACCTtttggaggacacacacacaccaatctctGATCTCTTCCTTCACTTATATTTGTTTATGATGCGTTCTGAGTTGCTCTGGAGAGCTGAGAGAGTAAATTACCTTTATTCATACAGGATGTAAGTTCCAGTGGGACCTTAAGTAATCATTAAGACCGTTCTgagagtgtgtggtgtgtgtgtacagcatatagtgtgttagtgtgtgagtCTCCCTTATGCAAGATCACCTCCCACCAGTCTTATAAACCCAACCAAACCTGACATCTCGGGAGCCTCTGACCTCATTGACAACTGAGCTCAACACCACTGCATAGTGGGTAGTCTGTAGACAGTGTTGGACATGTGGCGTAAACACAGACACCCTGTGTAagagtaaagtgtctgtagactaacagtaaagtgtctgtagacggtaacagtaatgtgtctgtaaactaacagtaaagtgtctgtagactaacagtaaagtgtctgtagactgtaactgtaaagtgtctgtagactgtaactgtaaagtgtctgtagactgtaacagtaaagtgtctatagactgtaacagtaaagtgtctatagattaacagtaaagtgtctgtagactataacagtaaagtgtctgtagactaacagtaaagtgtctgtagactaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctatagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctatagactaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagacggtaacagtaaagtgactgtaacagtaaagcgtctgtagactaacagtaaagtgtctgtagactgtaacagtaaagtgtatgtagactgtaacagtaaagtgtatGTAGACTAACAGTACAGTGTCTATAGACTAACAGTAAAGTGTatgtagactgtaacagtaaagtgtctgtaggctgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgactgtaacagtaaagtgactgtaacagtaaagtgtctataGACTGTAAAAGTAAagtgactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctatagactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagacggtaacagtaaagtgtctgtagactataacagtaaagtgtctatagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagactataacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgactgtaacagtaaagtgtctgtagactgtaacagtaaagtgactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctatagactgtaacagtaaagtgtctatagactgtaacagtaaagtgtctatagactgtaacagtaaagtgtctatagactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagacggtaacagtaaagtgactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagactgtaacagtaaagtgtatgtagactgtaacagtaaagtgtatGTAGACTAACAGTACAGTGTCTATAGACTAACAGTAAAGTGTatgtagactgtaacagtaaagtgtctgtaggctgtaacagtaaagtgtctatagactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtaggctgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgactgtaacagtaaagtgactgtaacagtaaagtgtctatagactgtaacagtaaagtgactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctatagactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagacggtaacagtaaagtgtctgtagactataacagtaaagtgtctatagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgactgtaacagtaaagtgactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtttgtagactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagacggtaacagtaaagtgactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagactatAACAGTAAAGCGTctatagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgactgtaacagtaaagtgactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctatagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctatagactaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagacggtaacagtaaagtgactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagactgtaacagtaaagtgtatgtagactgtaacagtaaagtgtatgtagactaacagtacagtatctatagactgtaacagtaaagtgtatgtagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgactgtaacagtaaagtgactgtaacagtaaagtgtctatagactgtaacagtaaagtgactgtaacagtaaagtgtctgtagactgtaacagtaaagtgactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctatagactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagacggTAATAGTAAagtgactgtaacagtaaagtgtctataGACTGTAACAgcaaagtgtctgtagactgtaacagtaaagtgtctgtagactgtaaaagtaaagtgtctgtagactgtaacagtaaagtgactgtaacagtaaagtgtctatagactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagacggtaacagtaaagtgtctgtagactataacagtaaagtgtctatagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgactgtaacagtaaagtgactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtttgtagactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagacggtaacagtaaagtgactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagactatAACAGTAAAGCGTctatagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagactaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgactgtaacagtaaagtgactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctatagactgtaacagtaaagtgtctgtagactgtaacagtaaagtgtctatagactaacagtaaagtgtctgtagactgtaacagtaaagtgtctgtagacggtaacagtaaagtgactgtaacagtaaagtgtctgtagactaacagtaaagtgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2056243 lncRNA downstream 48172 28886912 ~ 28887144 (-) True G1796758
TU2056228 lncRNA downstream 62511 28872595 ~ 28872805 (-) True G1796743
TU2056226 lncRNA downstream 63398 28871584 ~ 28871918 (-) True G1796741
TU2056224 lncRNA downstream 70108 28864999 ~ 28865208 (-) True G1796739
TU2056223 lncRNA downstream 70768 28864119 ~ 28864548 (-) True G1796738
TU2056287 lncRNA upstream 12110 28953415 ~ 28957799 (-) True G1796793
TU2056319 lncRNA upstream 57242 28998547 ~ 28998857 (-) True G1796820
TU2056321 lncRNA upstream 59686 29000991 ~ 29001282 (-) True G1796822
TU2056323 lncRNA upstream 60826 29002131 ~ 29002541 (-) True G1796824
TU2056326 lncRNA upstream 62630 29003935 ~ 29004148 (-) True G1796827
XR_005038812.1 mRNA downstream 108608 28819330 ~ 28826708 (-) False LOC110501699
trnan-guu-200 mRNA downstream 215184 28720059 ~ 28720132 (-) False trnan-guu-200
XM_036959044.1 mRNA downstream 386751 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA downstream 386751 28538705 ~ 28548565 (-) True LOC110501696
XM_036959043.1 mRNA downstream 392361 28538705 ~ 28542955 (-) False LOC110501696
XR_005038814.1 mRNA upstream 382840 29324145 ~ 29325269 (-) True LOC118943585
XM_021579450.2 mRNA upstream 492247 29433552 ~ 29441063 (-) False LOC110501708
XM_021579449.2 mRNA upstream 492247 29433552 ~ 29441071 (-) False LOC110501708
XM_021579452.2 mRNA upstream 664758 29606063 ~ 29619908 (-) True dnajc15
XM_021579453.2 mRNA upstream 765507 29706812 ~ 29727741 (-) True tnfsf11
TU2056199 other downstream 108671 28826287 ~ 28826645 (-) True LOC110501699
TU2055842 other downstream 308425 28626138 ~ 28626891 (-) True G1796401
TU2055669 other downstream 496545 28434915 ~ 28438771 (-) False G1796239
TU2055631 other downstream 600695 28334224 ~ 28334621 (-) True G1796204
TU2055220 other downstream 922626 28009655 ~ 28012690 (-) True LOC110501691
TU2056693 other upstream 270359 29211664 ~ 29243649 (-) False G1797146
TU2056696 other upstream 270359 29211664 ~ 29243649 (-) True G1797146
TU2057122 other upstream 718162 29659467 ~ 29660947 (-) True G1797556
TU2057451 other upstream 896972 29838277 ~ 29843180 (-) True LOC110501714
TU2057553 other upstream 1030253 29971558 ~ 29978535 (-) True G1797936

Expression Profile