RNA id: TU2056332


Basic Information

Item Value
RNA id TU2056332
length 4341
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1796828
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29005864 ~ 29010248 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTTTAATCACCATAATTTTATAGACACtgcataaataaatgaataattaTGTAGCTGTAATTTCACCTCACTAAACGGATAAATAATTGATAACGTTGCATTGAAACGTATATTCCATTTGTTCATATGCTGACTTTGTTGGTATATACATGTATCACACATAAATATATATTTCCATTTACGACATAGAAGCACATTTAGTATAGCCAGCCGAGCAACTGATGTGATTATGTTTTTTATTCTTTCATTTTGATTTGGTTTTCCAGTGATACTGTAGCACATAAGACAGCATGAAGCCTGGTCTCCTGGTTGAAGGAGAGGAAACTTTACATTCACATTACATTCTAAACAGACTGCCTGACACACAAGTCCACTCTGACACTTTGCATAGCATCAGACCAGCTCCCAATACTACCCAAATTAAGGCCATAATTCAAACAGATTAAAATGATATATTAAGACCAGCAAATGTTTActaacaaatactatttgagagGAGTGAAGCAGAGAATAGAAATACTCAACAACATCGAAACAACAACCAAATTTCCCATCATCATCTCAAATCTGCATTTTGACATGTTTTCTCTGACCAACCTATTGGTCAACAGACCTTCCTCAGCGTTTAGGGCTGGTTCGAGGCATAAGAGACATAAGCTTAGGGCCCCTGGCTGCTAGGGGGTCTCCCCACAAATGTCTTAAAAAGGAAGTCGgtcagggtctcaacttactgttgacagTTAGAATAGTATAATACACCAGGTGCGATTTAGAAATGTGGTTGTGTATCAGCAGTTTTTTCTTCTTGTGTCAGTTCACTGACTACGTTTCCATCCAGCCATTTCATGAGCATCAATTACCTGACGCATAAACAAGTCACGACTGGGCTGATGGAAACAAGAAATGCcgatacaattttataaatgccaacaGACAATGTTGGTTCAACATGGTGTGATCTtcttgtgtctgtaaaatgaattatgtgagaaatggtAGTGGAAgcgcctttatgcgcaaatattggtATAATAACCATcctatcgaagtaaacttggagtgaTGCAATGATatattgtgtggtcctcccactacgactcggaaaatcatgcagtttattaggctgcagttgaaataagttatgatgaacttcacacaGTGGGTGAATGTGCAAGGTGATGAatttgatgctcctttccaaaaAATATTGAGGGTCTTCTTCTGGTGACATGATCGATTCCTGGCTGCCGTTTGAAAAACacactcttatccataataatctcataacaTAGGTAatctacctgcactgtatctgccagctgttggctagagcacacgtgCCAAGACCGGAGTGAATACATTATATAACTCAAAAGGTTTCGTGACAAGACCAGAGTGAATACATTATATAACTCAAAAGGTTTCGTGACAAGACCAGAGTGAATACATTATATAACTCAAAAGGTTTCGTGACAAGACCAGAGTGAATACATTATATAACTCAAAAGGTTTTGTGACAAGACCATCAGTAGAGCTGAAAATGTGATTGAAACCCATCTAACTCTTATTTTTCATTTGGTACTGTTAAATGGAAATTGAACCACAAAAGTTATTTCCATCTACATTACGTCACGCACAGTATTTTAAAGGCAAAAAGTAAGTTtaatggaaacacatctctggtgcAAAATAAGCATATTATTTTATGCAGGTTTTAGAATatctgcatgaaaatctgtcgaaattggatggaaacctagctactgacagCCACTCagttagccatgtcagctaacaatttttagagTGGTAGTTAAACTcgtcagctatctaaacttgtagtaatcatggccgaataccaAATGCCCAGGGGACCTGACCTCCAgcaggcccccattgattttgtttggCATTCTCAGtgagatatcatattaacatggcataattcattacaaaatgtgtagaattgcaggaaatttgctttaaaactgcaaaaatatcTTTCCACCCCATGGTAAAAATGGATAAAATTGCAGTAGAACTGCAAAACAATCTCTCTGCCTCACGGCAAAATGTGTActattgcatgaaatgtgttataaatTGGAACATTTTCACTACACTTCCTGTAGAATCTCAGGAAATGAAgtttaaaacataaaacatgggctccccaaaaggctagagccggGCCCTGTCAGCGTTCACCTATCATTCACTCAGCATAGGACCTGCTCAGCTTCCAATCAATACAACCACTGATACCAAAACAACCAGTGCTGTTCTTTCCCTGTCTCAGCTCATAACCAGCTTGGAACACCAATCAAATGTTCTTGGGGCAGACGGACGGAGAAGAATCGAATCGTTCGTGCAAACGGGTTATTGATACGATCCCTGGAGGAGCAATCTCAGCCTCCCCAACCCCTCTGCCGCTCTGCTGCTGCTCTGCACTCAATAACAGTTTAGAGAAGGTAACAAACGATTATAGGGCCcatctcaaatggtaccctatttcctatattgcACACTACCTAACCTTATgtggctctggccaaaagtagtgcactatatagggaatatggtgtcatttctAATGCAGATGGATGAAAACCACAGCTAGGTCCACTTTCAACCAGTATAGCCATTAATACAGTATTTGTATGTCTTGTCACCTATATTGCTGACACACGGTAGTTTCTCAGTAAAAATGTGATGTAAGACTGTGAAATATAGCAAGTGTTCCGCTCCAACACAACAGCACAGTATTGAACCTCTCCACCTGCAGAGAGGAGGATTTTGGGACATGGACAACATGGAATAGGAGTTTCCCTTCTCAGCTCTGTTCAAATCCGGTTACTATGCAAATATTGTTAACACTGAGTATTCTGAACTGTACCAGCTTATTGTGTGGAAATTAGATTATGAGCACACAACATAAAAACAAACTGAAATGTTGTGTTTTTGCTATCAAGATAAAAAACAATCAACAGTTTGGAATGATTTGTAATGACATATATATTTAAAGCATGGACCCTAAAAACAGTATTGCTGTATTAGTAAGTTAATTCTAAGCAAATTAGGAAAtaatctaaataaataaataaaataatctaaAGCTGATTTCAGACACATAACTAATGGATATTAATTtgttcacgcacgcacgcacacacgcacgcacgtacacacgtacacacacacacaattaaataTTGCATTATATCACCCTCTGGGCTGGCATCCATCTCAGAGCTCCCTATTGACACATACAGACAGTTATATTTTATACCTTGATTACCTTACCTTTATAATGACTCCATTTACTGTAGCAGCACTGAGAACAGAAAACTAAAATGGCCGTGGCGTCTGATTCgcagagagtcagtcagtggttGATATGATGAGAACACGACGGGGCTGGATGGCTGGACAGACATGGTCTGGGCCTGGGTTCAAGGATCTACATCAGGGCTGGCTAACCCTTCTGCTGGAGAGCAATTGGtatgcaggcttttgctccagccctACTGTAGCACACCTGGTTGAGCTATTAAAGATGCTGATTAGTAGCGTCAGGTATGTTAGAGCAAGGCTGCAGCAAAATTCTGCAGGAGGGTAGGTACCCAGGAGGGCTGGTTCTAGTCAGTTCTGGGTCTAGGTCTGGCTCTGGGTCCTGGGCTTTGGGTCCTGGTCTCTACTCCTGGTCGTTGTTTAAGGACTCGGGGCTGGACTCCTCGTCATCACTGAGAGCCTCTGTGTTTGTAAACGCCCCGGCCAGTGAGGTGCTGAGGTGCGTTTTGACCGGCGCCATCTCCGACAGGATGATGTTGTCGTTACTGACCAACGTGGTCTTGTCCATGATCTCCTTACTGTGTTTGGACACCACAGCATCCATGAAGTCATACTTATGAGACAGAGTCCCAGACTCAAACAGGTACTTGAGCAGGTAGGAGAAGGCCACGTTACCCAGGAAGGAGGCCAGCATGGAGACCGTTTTAAAGGGGAAGCGTTGCTGGATGAAGTACTCCACGTCTCCAGTCAGGTGGTGGATCTTTTCCTGTTGCACCCACCCGGGGTAGTAGATAAAGGGGGGTAGTTTGAGGTAGGGCTCCCCTCCCCCGATACGCAGCAGCAGACCGAAGATGTAGCCGGCCACCGAGCCGTACGTGTTGGTTCCTTTGATGAAGAGCACGCTGAGCAGCTGGGGGAAGATGATAACATAGACCAGGTCGGAGCTCAGGTACCACAGGCCGTACACTGTCCCTGTGAGCAACGCCATGGCCGTGGCCAGAGCTCCAAACACAAAGATGGTGATACGCATCACCCACACGATCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2056326 lncRNA downstream 1716 29003935 ~ 29004148 (-) True G1796827
TU2056323 lncRNA downstream 3323 29002131 ~ 29002541 (-) True G1796824
TU2056321 lncRNA downstream 4582 29000991 ~ 29001282 (-) True G1796822
TU2056319 lncRNA downstream 7007 28998547 ~ 28998857 (-) True G1796820
TU2056287 lncRNA downstream 48065 28953415 ~ 28957799 (-) True G1796793
TU2056358 lncRNA upstream 21152 29031400 ~ 29031618 (-) True G1796847
TU2056370 lncRNA upstream 30892 29041140 ~ 29041351 (-) True G1796859
TU2056594 lncRNA upstream 59367 29069615 ~ 29072660 (-) True G1797056
TU2056608 lncRNA upstream 78985 29089233 ~ 29089646 (-) True G1797070
TU2056660 lncRNA upstream 147828 29158076 ~ 29159430 (-) True G1797116
XR_005038812.1 mRNA downstream 179156 28819330 ~ 28826708 (-) False LOC110501699
trnan-guu-200 mRNA downstream 285732 28720059 ~ 28720132 (-) False trnan-guu-200
XM_036959044.1 mRNA downstream 457299 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA downstream 457299 28538705 ~ 28548565 (-) True LOC110501696
XM_036959043.1 mRNA downstream 462909 28538705 ~ 28542955 (-) False LOC110501696
XR_005038814.1 mRNA upstream 313897 29324145 ~ 29325269 (-) True LOC118943585
XM_021579450.2 mRNA upstream 423304 29433552 ~ 29441063 (-) False LOC110501708
XM_021579449.2 mRNA upstream 423304 29433552 ~ 29441071 (-) False LOC110501708
XM_021579452.2 mRNA upstream 595815 29606063 ~ 29619908 (-) True dnajc15
XM_021579453.2 mRNA upstream 696564 29706812 ~ 29727741 (-) True tnfsf11
TU2056199 other downstream 179219 28826287 ~ 28826645 (-) True LOC110501699
TU2055842 other downstream 378973 28626138 ~ 28626891 (-) True G1796401
TU2055669 other downstream 567093 28434915 ~ 28438771 (-) False G1796239
TU2055631 other downstream 671243 28334224 ~ 28334621 (-) True G1796204
TU2055220 other downstream 993174 28009655 ~ 28012690 (-) True LOC110501691
TU2056693 other upstream 201416 29211664 ~ 29243649 (-) False G1797146
TU2056696 other upstream 201416 29211664 ~ 29243649 (-) True G1797146
TU2057122 other upstream 649219 29659467 ~ 29660947 (-) True G1797556
TU2057451 other upstream 828029 29838277 ~ 29843180 (-) True LOC110501714
TU2057553 other upstream 961310 29971558 ~ 29978535 (-) True G1797936